PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02382g01033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21184.8 Da PI: 5.3634 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 14 | 53 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 +g+W++ Ed+ll +++k++G g+W++ +++ + kq+k Peinf101Scf02382g01033.1 14 KGPWSAKEDLLLTNYIKEHGEGQWRSLPNKAD-KPRKKQVK 53 79************************999988.33446666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 5 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-7 | 9 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.312 | 9 | 64 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-6 | 14 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.34E-4 | 16 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MGRAPCCAKE GLRKGPWSAK EDLLLTNYIK EHGEGQWRSL PNKADKPRKK QVKKKKNKKI 60 KDQPLVQDTS EPPQVVFIPK PIRISSGHSR NYSVDQNVAL STSSSNSADN NNNISNNEGK 120 QAEVSFDPLF DEVVLDGCCE LSPEWSLPTD DSMLEKVYEE YLQLISEECF LQLDDPLAEN 180 ASHHPMLM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261444.1 | 7e-24 | PREDICTED: myb-related protein 308-like | ||||
STRING | Solyc08g008480.2.1 | 3e-20 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 2e-14 | myb domain protein 41 |