PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02382g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Protein Properties

Length: 419aa MW: 47069.4 Da PI: 7.0543

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02382g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	98.7	3.6e-31	94	200	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+kv tpsdv+k++rlv+pk++ae++ +++++ + l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+ Peinf101Scf02382g00003.1 94 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldssSNDHKAGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDI 178 89***************************9556667889**************************************** PP EEEEE-.SS.SEE..EEEEE-S CS B3 80 vvFkld.gr.sefelvvkvfrk 99 v F++ g+ + +l++ ++r+ Peinf101Scf02382g00003.1 179 VSFQRGaGElGKHRLFIDWRRR 200 **776888999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-40	85	203	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.62E-30	91	201	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.31E-25	92	183	No hit	No description
Pfam	PF02362	9.2E-29	94	200	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-22	94	201	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.353	94	201	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MNFLTSTRGI QEQEGGSSSA KGMYPFSQSS SSSQQIPLPL SYHNPRSSNE SKELMLMDSS 60 NNHGDSEPAD EVVDHGTRAN TASASVMIER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF 120 PLDSSSNDHK AGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS 180 FQRGAGELGK HRLFIDWRRR PDAPDHMMNP YHLSNWNHHH RLFLQPFQTP LSTHSRLLLE 240 GSSISQQHYS HYPHSYSYGI GNTSPYYDTC FSNTSTAAVV NANPCEGRSA SQFVLPQQFE 300 INMQMQRGST VDVEPMVYNS VPVVQGKVAA KRLRLFGVNM DCPMISNLDD SDHDMFPSTT 360 SLLTPTTTAV PYSHFSSSST STPNLLHSRN FNNCSPLQVV PPEELSDKGK ASMSLDLDI

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MNFLTSTRGI QEQEGGSSSA KGMYPFSQSS SSSQQIPLPL SYHNPRSSNE SKELMLMDSS  60
NNHGDSEPAD EVVDHGTRAN TASASVMIER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF  120
PLDSSSNDHK AGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS  180
FQRGAGELGK HRLFIDWRRR PDAPDHMMNP YHLSNWNHHH RLFLQPFQTP LSTHSRLLLE  240
GSSISQQHYS HYPHSYSYGI GNTSPYYDTC FSNTSTAAVV NANPCEGRSA SQFVLPQQFE  300
INMQMQRGST VDVEPMVYNS VPVVQGKVAA KRLRLFGVNM DCPMISNLDD SDHDMFPSTT  360
SLLTPTTTAV PYSHFSSSST STPNLLHSRN FNNCSPLQVV PPEELSDKGK ASMSLDLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-63	87	201	1	114	B3 domain-containing transcription factor NGA1
5os9_B	4e-63	87	201	1	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF668648	1e-133	KF668648.1 Nicotiana benthamiana NGATHAb mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803160.1	1e-162	PREDICTED: B3 domain-containing transcription factor NGA1-like
Swissprot	Q6EU30	4e-68	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	A0A1U7YWM8	1e-160	A0A1U7YWM8_NICSY; B3 domain-containing transcription factor NGA1-like
STRING	XP_009803160.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2817	23	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	2e-65	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]