PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02361g01037.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 379aa    MW: 41091 Da    PI: 6.5711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02361g01037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-173580147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W+++Ed  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Peinf101Scf02361g01037.1 35 KGPWSQDEDTVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 80
                              79******************************.***********985 PP
2Myb_DNA-binding58.81.2e-1887131147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               r+++T+eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Peinf101Scf02361g01037.1  87 RKPFTEEEDTIIIQAHAVHGNR-WASIAKLLP-GRTDNAIKNHWNST 131
                               789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8573081IPR017930Myb domain
SuperFamilySSF466893.74E-3132128IPR009057Homeodomain-like
SMARTSM007172.6E-143483IPR001005SANT/Myb domain
PfamPF002493.6E-163580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-253688IPR009057Homeodomain-like
CDDcd001671.05E-133779No hitNo description
PROSITE profilePS5129427.33782136IPR017930Myb domain
SMARTSM007175.3E-1886134IPR001005SANT/Myb domain
PfamPF002498.8E-1787131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2589135IPR009057Homeodomain-like
CDDcd001675.19E-1489132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEEAEQSDFK LIDAAVNGGD TMAVDENNGG GGKVKGPWSQ DEDTVLSELV SKFGARNWSL  60
IARGIPGRSG KSCRLRWCNQ LDPSVKRKPF TEEEDTIIIQ AHAVHGNRWA SIAKLLPGRT  120
DNAIKNHWNS TLRRRFAGLK RVNPTHFEML DSSNIDRVKA TSEETRSGDD HNQSKPLEAR  180
EASVQQCKRT LLEDRVPVSE MFGVPEKVAH LVSGRCHSTI NENSPSVSRP TAKVGAFDVH  240
NLSSASFASS RTVPMQGHLL QAFSPDFGIC KLLEGVSDEP IIPSSCGHGC CSAHSKSSSA  300
SSLLGPEFVE YEELPAVSSH ELFAMATDLN NIAWIKSGLE NAGKLPDKTT SGRDHQGSSA  360
STPMPMTSFV LPAQVESLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-42341356107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434457.10.0PREDICTED: transcription factor MYB122-like
TrEMBLA0A1S3X3J00.0A0A1S3X3J0_TOBAC; transcription factor MYB122-like
STRINGXP_009781248.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.19e-88myb domain protein 109