PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02339g10011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YB

Protein Properties

Length: 139aa MW: 15744.7 Da PI: 5.0732

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02339g10011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	169.4	4.2e-53	19	114	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 reqdr+lPianv+rimk +lP nakisk+aket+qecvsefi+fvtseasdkc++e+rkt+ngdd++wal+tlGf+dy +lk y Peinf101Scf02339g10011.1 19 REQDRLLPIANVGRIMKTILPPNAKISKEAKETMQECVSEFIAFVTSEASDKCRKERRKTVNGDDVCWALGTLGFDDYSGALKRY 103 89********************************************************************************* PP NF-YB 87 lkkyrelegek 97 l++yre+egek Peinf101Scf02339g10011.1 104 LHRYREMEGEK 114 *******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-51	16	132	IPR009072	Histone-fold
SuperFamily	SSF47113	8.54E-39	21	124	IPR009072	Histone-fold
Pfam	PF00808	1.7E-26	24	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.2E-16	52	70	No hit	No description
PRINTS	PR00615	2.2E-16	71	89	No hit	No description
PRINTS	PR00615	2.2E-16	90	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MAHQNMGASS SNDEVGVSRE QDRLLPIANV GRIMKTILPP NAKISKEAKE TMQECVSEFI 60 AFVTSEASDK CRKERRKTVN GDDVCWALGT LGFDDYSGAL KRYLHRYREM EGEKVNQERV 120 SNSEELMEEP AAQPRNYID

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-43	19	109	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-43	19	109	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	1e-92	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006342784.1	1e-77	PREDICTED: nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	8e-58	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	M1C2L2	3e-76	M1C2L2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400058414	5e-77	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-60	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]