PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02318g03012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

BBR-BPC

Protein Properties

Length: 301aa MW: 33919.7 Da PI: 9.8009

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02318g03012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	289.1	1.9e-88	16	301	27	301
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerd...............maflqrdkalae....rnkalverdnkllalllvensla 92 ++ ++ aerd++i+er+ a+ + + erd a+ +rd a+++ r+ al erdn+++al + e +++ Peinf101Scf02318g03012.1 16 KIRTLSAERDTAIEERDRAVEA----LEERDlaiqraleerdlamqRALEERDLAIQQviseRDTALKERDNAIAALHFLESTMN 96 4444455888888666664432....222222222223333377666677788776655555***************999866 PP GAGA_bind 93 salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177 +l g+ +gtk ++ ++ ++ + ++sa +r+ +++a+pi+ ++a ++ ++k+++ +k +k ak+++k ++k ++ Peinf101Scf02318g03012.1 97 GTL--GC-RTRGTKRPNQPKH-HRDNSTNSACIQRDVPITDAFPISAISSKAAKAVQVKRTKVNKGMPTKSAKSPRK-TKKVSED 176 554..33.4577777775555.44566666666799999**99999998888888666655555555555555.4444455 PP GAGA_bind 178 vkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261 +++ + + skae++ +dl +ln +++Dest+P+PvC+CtG +rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aRi+grKmS Peinf101Scf02318g03012.1 177 LNRHLTTDGSKAEWDAQDLgSLNLINFDESTMPIPVCTCTGLPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHARIGGRKMS 261 5666656789*****88************************************************************ PP GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +++f++lL +La+ Gydls pvDLk++WAkHGtn+++ti+ Peinf101Scf02318g03012.1 262 GSVFSRLLTRLASAGYDLSIPVDLKTYWAKHGTNRYITIK 301 *************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.3E-99	7	301	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.1E-89	8	301	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MLPHYQMDQE TFIMKKIRTL SAERDTAIEE RDRAVEALEE RDLAIQRALE ERDLAMQRAL 60 EERDLAIQQV ISERDTALKE RDNAIAALHF LESTMNGTLG CRTRGTKRPN QPKHHRDNST 120 NSACIQRDVP ITDAFPISAI SSKAAKAVQV KRTKVNKGMP TKSAKSPRKT KKVSEDLNRH 180 LTTDGSKAEW DAQDLGSLNL INFDESTMPI PVCTCTGLPR QCYKWGSGGW QSSCCTTYLS 240 EYPLPQLPNK RHARIGGRKM SGSVFSRLLT RLASAGYDLS IPVDLKTYWA KHGTNRYITI 300 K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982315	0.0	FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804621.1	1e-172	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_009804622.1	1e-172	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_016442557.1	1e-172	PREDICTED: protein BASIC PENTACYSTEINE4-like
TrEMBL	A0A1S3XSA2	1e-171	A0A1S3XSA2_TOBAC; protein BASIC PENTACYSTEINE4-like
TrEMBL	A0A1U7YRN9	1e-171	A0A1U7YRN9_NICSY; protein BASIC PENTACYSTEINE4-like
STRING	XP_009804621.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9287	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	4e-90	basic pentacysteine 4