PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02288g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26857.2 Da PI: 8.5878 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 64 | 116 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le++F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k Peinf101Scf02288g00009.1 64 KKRLTNDQLESLENCFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 116 5679************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-19 | 49 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-17 | 60 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.89E-17 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 7.8E-18 | 63 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 65 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.8E-6 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.8E-6 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.1E-7 | 118 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDWNGNFRPF VSRPAPPDNS LNFLYNYNYD QYPGMEMKHA MQTQHGGVLP TMDKNNYANQ 60 LDKKKRLTND QLESLENCFQ EEIKLDPDRK MKLAKELGLQ PRQIAVWFQN RRARWKTKQL 120 ERLYDSLKQD YDIVSREKQK LQDEVLALRA ILKEQAATKK QVSTVYTEIS GEETVESTSI 180 PGPNKTRGTT SNHHQNNNMA TDCSYVFNVN VDGFNPMNMP PYNWAALPSY P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 2e-31 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 2e-31 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758049.1 | 1e-137 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Refseq | XP_016490887.1 | 1e-137 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-58 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1S4BPS4 | 1e-135 | A0A1S4BPS4_TOBAC; putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1U7V734 | 1e-135 | A0A1U7V734_NICSY; putative homeobox-leucine zipper protein ATHB-51 | ||||
STRING | XP_009758049.1 | 1e-136 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-61 | homeobox 51 |
Publications ? help Back to Top | |||
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