PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02272g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 589aa MW: 66536.1 Da PI: 9.6615 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.2e-08 | 25 | 69 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a +++ ++ +W ++a++++ g+t +++ + Peinf101Scf02272g00040.1 25 KWTPAENKAFENALALFDKDtpdRWQKVAEMVP-GKTVVDVIKQYK 69 8********************************.******998876 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 5.7e-14 | 133 | 177 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Peinf101Scf02272g00040.1 133 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 177 7*****************************99************9 PP | |||||||
3 | Myb_DNA-binding | 24.1 | 8.2e-08 | 313 | 357 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a +++ ++ +W ++a++++ g+t +++ + Peinf101Scf02272g00040.1 313 KWTPAENKAFENALALFDKDtpdRWQKVAEMVP-GKTVVDVIKQYK 357 8********************************.******998876 PP | |||||||
4 | Myb_DNA-binding | 43.8 | 5.7e-14 | 421 | 465 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Peinf101Scf02272g00040.1 421 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 465 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-4 | 16 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.901 | 21 | 74 | IPR017884 | SANT domain |
SMART | SM00717 | 2.7E-10 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-11 | 24 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.8E-7 | 25 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.55E-7 | 25 | 71 | No hit | No description |
PROSITE profile | PS51294 | 19.663 | 126 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-16 | 127 | 181 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-17 | 129 | 181 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-12 | 130 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-12 | 131 | 177 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-12 | 133 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-10 | 133 | 178 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-4 | 304 | 357 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.901 | 309 | 362 | IPR017884 | SANT domain |
SMART | SM00717 | 2.7E-10 | 310 | 362 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-11 | 312 | 367 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.8E-7 | 313 | 358 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.55E-7 | 313 | 359 | No hit | No description |
PROSITE profile | PS51294 | 19.663 | 414 | 470 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-16 | 415 | 469 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-17 | 417 | 469 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-12 | 418 | 468 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-12 | 419 | 465 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-12 | 421 | 465 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-10 | 421 | 466 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MEILSPSPYI SNSSWFLDEN SKSTKWTPAE NKAFENALAL FDKDTPDRWQ KVAEMVPGKT 60 VVDVIKQYKE LEDDVSRIEA GLISIPGYGT TSPFTLEWGN SHSFDEYKQS YVVGGKRSLS 120 NRPQEQERKK GIPWTEEEHK LFLMGLKKYG KGDWRNISRN FVITRTPTQV ASHAQKYFIR 180 QLSGGKDKRR ASIHDITTIN LNDNQTSSPD HQTPASLDQS NVISQQAKSA SNAMHKMPFQ 240 WTQANNGFNS AQGSLFMSPP YGGNSYGNTK MQSQSLQRGA LPMHESYFGS QSMNFQLQSA 300 QHWFLDENSK STKWTPAENK AFENALALFD KDTPDRWQKV AEMVPGKTVV DVIKQYKELE 360 DDVSRIEAGL ISIPGYGTTS PFTLEWGNSH SFDEYKQSYV VGGKRSLSNR PQEQERKKGI 420 PWTEEEHKLF LMGLKKYGKG DWRNISRNFV ITRTPTQVAS HAQKYFIRQL SGGKDKRRAS 480 IHDITTINLN DNQTSSPDHQ TPASLDQSNV ISQQAKSASN AMHKMPFQWT QANNGFNSAQ 540 GSLFMSPPYG GNSYGNTKMQ SQSLQRGALP MHESYFGSQS MNFQLQSAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-14 | 26 | 379 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603384.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_009603385.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016432478.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-142 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3WXT5 | 0.0 | A0A1S3WXT5_TOBAC; transcription factor DIVARICATA-like | ||||
STRING | XP_009603384.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 5e-97 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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