PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02206g05018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 24443.2 Da PI: 9.581 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 4.9e-14 | 55 | 101 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f eL llP + kK++Ka+iLe+A++++k+Lq Peinf101Scf02206g05018.1 55 DHIIAERKRREKLSQRFVELSALLPGL-----KKVDKASILEQAIKCVKELQ 101 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.723 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-11 | 55 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-16 | 55 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.40E-12 | 56 | 105 | No hit | No description |
SuperFamily | SSF47459 | 8.9E-17 | 56 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-13 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MNNVINVNSV PKAVKLNPWM RIRIYFFPYV KSKSFNDQED NKDRKIKIPS VDHQDHIIAE 60 RKRREKLSQR FVELSALLPG LKKVDKASIL EQAIKCVKEL QEKVQLLEEQ KKTSRSIMFV 120 NKSQLEEEDD NYSSSDEINS HGSIITDDIP LDIKARFSDK NVLITITCAR RTAFLMKMYD 180 EIEKLHLTIV NSSMMPFGKH ANHVTIVAQV N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 64 | ERKRRE |
2 | 60 | 65 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065347.1 | 2e-65 | transcription factor bHLH25-like | ||||
TrEMBL | A0A2G3D8F6 | 5e-67 | A0A2G3D8F6_CAPCH; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078696 | 4e-63 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13602 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-31 | bHLH family protein |