PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02158g01002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 467aa    MW: 52691.3 Da    PI: 6.5102
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02158g01002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS469.71.6e-143494641374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lLl+cA++v++g+le+a+ +L ++s+laspdgd+mqR+a+yf+eALa r++rs++++ykal++++ s   +se + + k+f+
  Peinf101Scf02158g01002.1  49 LIHLLLTCANHVAAGSLENANIALDQISQLASPDGDTMQRIASYFAEALADRILRSWPGIYKALHSTKLS--VVSEDILVKKMFF 131
                               689*************************************************************999998..69*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               e +P+lk++ +++NqaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++    +ke le++++ L++ Ae
  Peinf101Scf02158g01002.1 132 EYFPFLKVASVITNQAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLEKIAHVLTEEAE 212
                               ****************************************************************....9**************** PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214
                               +l++pf+f+  v+++le+l++e+Lr+k+gEala+++v+qlh+ll                                         
  Peinf101Scf02158g01002.1 213 KLDIPFQFHQ-VVSKLENLDVEKLRIKTGEALAISSVMQLHTLLahdcehqkksplafkhlnghhlqralfnpnntlgellekdt 296
                               **********.799*********************************************************************** PP

                      GRAS 215 .........desvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                                         +     s    + d +L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le +l r+s er kvE
  Peinf101Scf02158g01002.1 297 gnesassspLS-----SiasaKMDGFLHALWGLSPKVMVVTEQDSNHNGTTLMERLSESLYFYAALFDCLEFTLQRTSLERLKVE 376
                               *9997754322.....22345689************************************************************* PP

                      GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                               ++l+g+ei+nvvaceg er+erhe+l kW +r++ aGF++vpls++a+ qa++ll+ +  +gy+++ee+g++v++W+dr+L+svS
  Peinf101Scf02158g01002.1 377 KMLFGEEIKNVVACEGGERKERHEKLDKWFQRFDGAGFGNVPLSYYAMLQARRLLQSYTCEGYKIKEENGCVVICWQDRALFSVS 461
                               ************************************************************************************* PP

                      GRAS 372 aWr 374
                               aWr
  Peinf101Scf02158g01002.1 462 AWR 464
                               **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.40523444IPR005202Transcription factor GRAS
PfamPF035145.6E-14149464IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLQQDDGSSS VTSSSPLQNF PMMSLSPNFG GSPYHWLKEL KSEERGLYLI HLLLTCANHV  60
AAGSLENANI ALDQISQLAS PDGDTMQRIA SYFAEALADR ILRSWPGIYK ALHSTKLSVV  120
SEDILVKKMF FEYFPFLKVA SVITNQAIIE AMEGEKMVHI VDLNASEPLQ WRALLQDLSA  180
RPEGPPHLRI TGVHQQKEVL EKIAHVLTEE AEKLDIPFQF HQVVSKLENL DVEKLRIKTG  240
EALAISSVMQ LHTLLAHDCE HQKKSPLAFK HLNGHHLQRA LFNPNNTLGE LLEKDTGNES  300
ASSSPLSSIA SAKMDGFLHA LWGLSPKVMV VTEQDSNHNG TTLMERLSES LYFYAALFDC  360
LEFTLQRTSL ERLKVEKMLF GEEIKNVVAC EGGERKERHE KLDKWFQRFD GAGFGNVPLS  420
YYAMLQARRL LQSYTCEGYK IKEENGCVVI CWQDRALFSV SAWRCRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-70334662380Protein SCARECROW
5b3h_D2e-70334662380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016505834.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S4CXT40.0A0A1S4CXT4_TOBAC; scarecrow-like protein 3
STRINGXP_009793219.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]