PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02158g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 467aa MW: 52691.3 Da PI: 6.5102 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 469.7 | 1.6e-143 | 49 | 464 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lLl+cA++v++g+le+a+ +L ++s+laspdgd+mqR+a+yf+eALa r++rs++++ykal++++ s +se + + k+f+ Peinf101Scf02158g01002.1 49 LIHLLLTCANHVAAGSLENANIALDQISQLASPDGDTMQRIASYFAEALADRILRSWPGIYKALHSTKLS--VVSEDILVKKMFF 131 689*************************************************************999998..69*********** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e +P+lk++ +++NqaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++ +ke le++++ L++ Ae Peinf101Scf02158g01002.1 132 EYFPFLKVASVITNQAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLEKIAHVLTEEAE 212 ****************************************************************....9**************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214 +l++pf+f+ v+++le+l++e+Lr+k+gEala+++v+qlh+ll Peinf101Scf02158g01002.1 213 KLDIPFQFHQ-VVSKLENLDVEKLRIKTGEALAISSVMQLHTLLahdcehqkksplafkhlnghhlqralfnpnntlgellekdt 296 **********.799*********************************************************************** PP GRAS 215 .........desvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 + s + d +L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le +l r+s er kvE Peinf101Scf02158g01002.1 297 gnesassspLS-----SiasaKMDGFLHALWGLSPKVMVVTEQDSNHNGTTLMERLSESLYFYAALFDCLEFTLQRTSLERLKVE 376 *9997754322.....22345689************************************************************* PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++l+g+ei+nvvaceg er+erhe+l kW +r++ aGF++vpls++a+ qa++ll+ + +gy+++ee+g++v++W+dr+L+svS Peinf101Scf02158g01002.1 377 KMLFGEEIKNVVACEGGERKERHEKLDKWFQRFDGAGFGNVPLSYYAMLQARRLLQSYTCEGYKIKEENGCVVICWQDRALFSVS 461 ************************************************************************************* PP GRAS 372 aWr 374 aWr Peinf101Scf02158g01002.1 462 AWR 464 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.405 | 23 | 444 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.6E-141 | 49 | 464 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MLQQDDGSSS VTSSSPLQNF PMMSLSPNFG GSPYHWLKEL KSEERGLYLI HLLLTCANHV 60 AAGSLENANI ALDQISQLAS PDGDTMQRIA SYFAEALADR ILRSWPGIYK ALHSTKLSVV 120 SEDILVKKMF FEYFPFLKVA SVITNQAIIE AMEGEKMVHI VDLNASEPLQ WRALLQDLSA 180 RPEGPPHLRI TGVHQQKEVL EKIAHVLTEE AEKLDIPFQF HQVVSKLENL DVEKLRIKTG 240 EALAISSVMQ LHTLLAHDCE HQKKSPLAFK HLNGHHLQRA LFNPNNTLGE LLEKDTGNES 300 ASSSPLSSIA SAKMDGFLHA LWGLSPKVMV VTEQDSNHNG TTLMERLSES LYFYAALFDC 360 LEFTLQRTSL ERLKVEKMLF GEEIKNVVAC EGGERKERHE KLDKWFQRFD GAGFGNVPLS 420 YYAMLQARRL LQSYTCEGYK IKEENGCVVI CWQDRALFSV SAWRCRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-70 | 33 | 466 | 2 | 380 | Protein SCARECROW |
5b3h_D | 2e-70 | 33 | 466 | 2 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016505834.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A1S4CXT4 | 0.0 | A0A1S4CXT4_TOBAC; scarecrow-like protein 3 | ||||
STRING | XP_009793219.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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