PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02156g00010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 494aa    MW: 54382.9 Da    PI: 9.3164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02156g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056890123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              + C++C+k F r  nL+ H r H
  Peinf101Scf02156g00010.1 68 FICEICNKGFQRDQNLQLHRRGH 90
                              89*******************88 PP
2zf-C2H214.10.00014145167123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k +  +s+ k H +t+
  Peinf101Scf02156g00010.1 145 WKCEKCSKKYAVQSDWKAHAKTC 167
                               58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.89E-76790No hitNo description
PROSITE profilePS5015710.8456890IPR007087Zinc finger, C2H2
SMARTSM003550.0226890IPR015880Zinc finger, C2H2-like
PfamPF121715.9E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355110110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.89E-7140165No hitNo description
SMARTSM00355140145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSSGDVFSIP SSLKGVVLPH PSQELEPNPN PKANNPSSKK RRNLPGTPDP DAEVIALSPK  60
TLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN KQEPVKKKVY ICPEKTCVHH  120
DSSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHAKTCGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALAEES ARITSVGTNN LNFNQQPNLP NGMSQIGTCF AQDFGGMTTG  240
NSLHHQQKPR LSLWLNQANN NSQLNPLHMS NSNLFASSSC STGLPDHMVQ MPSPNVFNNQ  300
MSWTLDKNLA ATTTTTQTPS NLSLSSPQAT SMTETLSSMY SDNQNHQTKS STPMSATALL  360
QKAAQMGSTK SSPTFFNNTF GVMNSSSSSS NTPMFNTLNQ NNSEMHQVFA KQSEDNYNTT  420
VSLPMPDDNN GLMGCPNMSS SSNTQGVTFN LDNSLTRDFL GMGNEGGRPF LAQELAKFAS  480
MTSAMGLSHY SSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-40141210372Zinc finger protein JACKDAW
5b3h_F5e-40141210372Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5768131e-135EF576813.3 Solanum lycopersicum chromosome 9 clone C09HBa0072G22, complete sequence.
GenBankHG9754481e-135HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-135HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781290.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_016463819.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
TrEMBLA0A1S3ZHG70.0A0A1S3ZHG7_TOBAC; zinc finger protein JACKDAW-like isoform X1
TrEMBLA0A1U7X4880.0A0A1U7X488_NICSY; zinc finger protein JACKDAW-like isoform X1
STRINGXP_009781290.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-103C2H2-like zinc finger protein