PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02138g03014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 183aa MW: 21758.6 Da PI: 10.0545 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 24 | 75 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++eq++ Le+ F +++++ +e++ +LA++lg++ rq+++W+qNrRa++k+ Peinf101Scf02138g03014.1 24 RLNQEQVKLLEASFDSTKKLETERKLQLARELGVPPRQISIWYQNRRARWKN 75 589***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-14 | 18 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.96E-17 | 21 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 23 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.53E-12 | 24 | 76 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 24 | 75 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.5E-5 | 47 | 56 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.5E-5 | 56 | 72 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MTSFLNSQNS QKHHYIPKHH NNKRLNQEQV KLLEASFDST KKLETERKLQ LARELGVPPR 60 QISIWYQNRR ARWKNQTLEV DYNALQIQLE TALSEKRQLE KETERLREEL QKANEMLSAL 120 NEGQGQREII PLSDYSISSC CEERGNSSFQ EDVRFRRTVQ MSFNFGDMKM KRILIWVSSR 180 TKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791458.1 | 4e-71 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
Refseq | XP_016444534.1 | 4e-71 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A1J6I7E7 | 3e-72 | A0A1J6I7E7_NICAT; Homeobox-leucine zipper protein athb-52 | ||||
STRING | XP_009791458.1 | 2e-70 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-24 | HD-ZIP family protein |