PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02018g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 23570.5 Da PI: 7.1662 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 150 | 195 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq Peinf101Scf02018g00018.1 150 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 195 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.958 | 144 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-16 | 147 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.98E-13 | 148 | 199 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.7E-17 | 149 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-13 | 150 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 150 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MQRGTTGGGG GGGLSRYRSA PATWLEALLE SDTENEQVPI SHTTTPSKPP PHPSTQHQLP 60 DLKPATGGFA ADLGLFESGV SNNFLRQNSS PADFLAHISS DAACVWEKGE PSGKLHGSGG 120 SMDAEMEKLM EDLVPCKVRA KRGCATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKQTNT 180 ADMLEEAVEY VKFLQKQIQE LTEHQKKCTC SMKDQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 8e-46 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 8e-46 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356502.1 | 1e-107 | PREDICTED: transcription factor bHLH81-like | ||||
Swissprot | Q9C8P8 | 6e-55 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | M1D3H5 | 1e-106 | M1D3H5_SOLTU; Uncharacterized protein | ||||
STRING | XP_009788006.1 | 1e-106 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11787 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 5e-45 | bHLH family protein |