PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02016g04026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | AP2 | ||||||||
Protein Properties | Length: 364aa MW: 40773.9 Da PI: 5.8728 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.2e-21 | 15 | 66 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GVr +k +g+Wv+eIr+p gk++r++lg+f+t+e+Aa+a++aa++ l+g+ Peinf101Scf02016g04026.1 15 SPYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTPEMAAAAYDAAALHLRGH 66 68*****999.**********8...557**************************97 PP | |||||||
2 | AP2 | 55.6 | 1.3e-17 | 183 | 231 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p gk++r++lg++ t+e+Aa+a++ a+ l+ Peinf101Scf02016g04026.1 183 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKR 231 9****999.**********8...557**********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-22 | 15 | 74 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.077 | 16 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-37 | 16 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-10 | 17 | 28 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-22 | 17 | 75 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-32 | 17 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 17 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-10 | 39 | 55 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.669 | 182 | 239 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-32 | 182 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-30 | 182 | 240 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 182 | 240 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.04E-20 | 183 | 241 | No hit | No description |
Pfam | PF00847 | 1.7E-11 | 183 | 230 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEENNKSSKG GGVTSPYRGV RKRKWGKWVS EIREPGKKTR IWLGSFDTPE MAAAAYDAAA 60 LHLRGHAARL NFPELVNYIT KPASSSPEDV RLAAQEAALR VKMSTAGSVE SHEEMGSSSH 120 ATNNLAPITI GLSPSQIQAI NDFPMDSPNK MWSDIGEETM FTSNDYEMKK MEDLQESNNI 180 QMYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK RHKAQLNFPE 240 LIDSFPKPTS SKPEDVQMAA HEAAVRFKQQ TPMTPENGGS DGGGTVVPVR VGLSPSQIQA 300 INESPMDSPK MWMELAGALL LRDPVREYTC PSYSYNDPMI LCEDIGEFEE WDEMQQHHGS 360 IWDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 17 | 244 | 6 | 68 | ATERF1 |
3gcc_A | 2e-16 | 17 | 244 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 2e-66 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619745.1 | 1e-101 | PREDICTED: ethylene-responsive transcription factor ERF022-like | ||||
Refseq | XP_016502765.1 | 1e-101 | PREDICTED: ethylene-responsive transcription factor ERF022-like | ||||
Swissprot | Q9C9I2 | 4e-49 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A2P5XD26 | 1e-107 | A0A2P5XD26_GOSBA; Uncharacterized protein | ||||
STRING | XP_009619745.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-48 | ERF family protein |