PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02008g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 23948.7 Da PI: 9.6734 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.6 | 1.9e-12 | 126 | 205 | 14 | 94 |
T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 + l lp + +++ + k + + l+ ++ r W + r +sg+ vlt GWk+F a +Lk gD ++F+l+++ +++ ++v Peinf101Scf02008g00028.1 126 DFLQLPESW-RKYlkKRAKMGRWIIYLRGPDKRPWATFY--RSRSGKEVLTHGWKNFTAAYDLKPGDKCLFQLENQlECT-FNV 205 556666665.356564445566789**************..999999*************************98764433.455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.068 | 113 | 209 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0046 | 118 | 209 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.08E-11 | 122 | 207 | No hit | No description |
Pfam | PF02362 | 1.4E-9 | 125 | 205 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-13 | 126 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-13 | 126 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MWVLPHEAKK SSLIKKELVE TATEVDCPAK RRRLVKKEEL VETAIEADCP PKKIRLVKKE 60 PGEAATEAYC LARALSALIS FDMTVPDSGK EPRNGKDKVI KSEPADSGET PSLISYSFLQ 120 EVDGRDFLQL PESWRKYLKK RAKMGRWIIY LRGPDKRPWA TFYRSRSGKE VLTHGWKNFT 180 AAYDLKPGDK CLFQLENQLE CTFNVQVQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 33 | KRRRL |
2 | 137 | 143 | LKKRAKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616984.1 | 6e-65 | PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X9 | ||||
Refseq | XP_009616985.1 | 6e-65 | PREDICTED: B3 domain-containing protein Os01g0905400-like isoform X9 | ||||
Refseq | XP_009616988.1 | 5e-65 | PREDICTED: uncharacterized protein LOC104109401 isoform X15 | ||||
TrEMBL | A0A1J6IKJ0 | 2e-56 | A0A1J6IKJ0_NICAT; B3 domain-containing protein | ||||
STRING | XP_009616981.1 | 5e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 |