PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01997g03034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 323aa MW: 36213.1 Da PI: 9.5279 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.3 | 3.5e-13 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E++++++a +++ + Wk+I + +g +t q++s+ qky Peinf101Scf01997g03034.1 60 RESWTDQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 104 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-17 | 54 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.014 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.5E-18 | 58 | 107 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 58 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-11 | 60 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.19E-8 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MVSVYSTPPP GQDLYYSTTI GDPMMRMGLP GLTNNGAGIH TGLDEHNKKT RKPYTITKSR 60 ESWTDQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTSEHVPPP 120 RPKRKAAHPY PQKAPKKAVV SQVNRPFQPQ GALPELGFVI GPDSLSVPGN TINFSPWTYD 180 NVPAISTTHM RKDDTQLSSG PVTGNCSTSS NESMPSFCTT KESNDQKENK KHMKVMPDFA 240 QVYSFIGSVF DPSTRDHLGR LKQMDPIDVQ TALMLMKNLS FNLLSPEFED HRRLLSSYGL 300 GAEKDKIDSP IKTDFRENAI PTV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776267.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X3 | ||||
Swissprot | Q8H0W3 | 5e-94 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A1U7W8D5 | 0.0 | A0A1U7W8D5_NICSY; protein REVEILLE 6 isoform X3 | ||||
STRING | XP_009617756.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA998 | 24 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 5e-82 | MYB_related family protein |
Publications ? help Back to Top | |||
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