PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01968g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21552.4 Da PI: 6.4769 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135 | 2.9e-42 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+ Peinf101Scf01968g00003.1 38 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARLRDPVYGCAGAICQLQK 122 7************************************************************************************ PP DUF260 86 qleqlkaelallkee 100 q+++l+a+la++++e Peinf101Scf01968g00003.1 123 QVNELQAQLAKAQAE 137 ***********9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.011 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-42 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEPSIITSSS SRSVSPSSSS SPPNSPTTQP RAVVVVSPCA ACKILRRRCA EKCVLAPYFP 60 PNDPIKFTTA HRVFGASNII KFLQELPEYQ RADAVSSMVY EANARLRDPV YGCAGAICQL 120 QKQVNELQAQ LAKAQAEVVN MQCQQANLMA LICMEIDQSP QSSPPPQQSL DNFTNNIPHF 180 FDDNNNFGSA WETLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 37 | 145 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 37 | 145 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-52 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 2e-52 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593636.1 | 1e-101 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_016487519.1 | 1e-101 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1S4BF48 | 1e-99 | A0A1S4BF48_TOBAC; LOB domain-containing protein 1-like | ||||
STRING | XP_009593636.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-65 | LOB domain-containing protein 1 |