PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01889g14051.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 469aa    MW: 51944.4 Da    PI: 8.8881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01889g14051.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-0586108123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F r  nL+ H r H
  Peinf101Scf01889g14051.1  86 FVCEICNKGFQRDQNLQLHKRGH 108
                               89******************988 PP
2zf-C2H213.50.00022163185123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k++  +s+ k H +t+
  Peinf101Scf01889g14051.1 163 WKCEKCSKRYAVQSDWKAHSKTC 185
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.56E-785108No hitNo description
Gene3DG3DSA:3.30.160.608.8E-685108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.90786108IPR007087Zinc finger, C2H2
PfamPF121714.0E-586108IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01786108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM00355210128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.56E-7158183No hitNo description
SMARTSM00355130163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MIQQKQQVLE ENMSNITSAS CEAASFSSCN RNDITTGGMY PLQHFTPQNQ TQPLQIKKKR  60
NQPGNPDPEA EVIALSPKSL LATNRFVCEI CNKGFQRDQN LQLHKRGHNL PWKLKKRTTN  120
EVIRKKVYVC PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA  180
HSKTCGTKEY RCECGTIFSR RDSFITHRAF CDALTVENAR SAISRNPTLP SHMNLQFQAP  240
HFSSIKKEQP SDYNLRHDQI PPWLMTSQPY VGGGHHDFSS SIFQATRFDQ GCTQSHQDLT  300
STNLHENPNP NLGGVLFASV AAPYHSTGEA SATSRHISAT ALLQKAAQLG ATTMSNKTSS  360
PSMSSPTDTG PAMLIMRPHQ THVSAATDSA VSSKQNLSSR EQLTSSGLLI NSFGSCDENK  420
AAAAATVPAF GFEGSTFEDM TKDFLGLRPL SHSDIFNIAG LVDHKTIWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34159226371Zinc finger protein JACKDAW
5b3h_F4e-34159226371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112125KLKKRTTNEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238130.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
TrEMBLA0A1J6KS430.0A0A1J6KS43_NICAT; Protein indeterminate-domain 11
STRINGXP_009603433.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-111indeterminate(ID)-domain 11