PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01862g00018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 224aa    MW: 26403.4 Da    PI: 4.5649
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01862g00018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.2e-202575656
                              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              +ft+eq++ Le++F+++ ++  +++ eLA+ lgL+ rqV +WFqNrRa++k
  Peinf101Scf01862g00018.1 25 RFTDEQVKLLESMFKEKTKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 75
                              7*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.93E-191078IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-201383IPR009057Homeodomain-like
PROSITE profilePS5007117.6861777IPR001356Homeobox domain
SMARTSM003891.9E-181981IPR001356Homeobox domain
PfamPF000462.7E-172575IPR001356Homeobox domain
CDDcd000863.98E-152578No hitNo description
PRINTSPR000313.7E-64857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000313.7E-65773IPR000047Helix-turn-helix motif
PfamPF021835.8E-1377118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEVEDTPVQW NNEPSNKKST KDGKRFTDEQ VKLLESMFKE KTKLEPRKKL ELARDLGLQP  60
RQVAIWFQNR RARWKSKQIE HEYRVLKEEF DKLNMQYESL KKEKESLLKQ VKELNDQLEN  120
NHSGSSRSQD SIESEIYTCS VNGGTELEWK DNIQDCLVAS LDQERITEVD NDRTIEQFKW  180
KEEAEFWDVE ELGDSPLASP EHWCAIDQDG ALDLSCGNSK LWEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977RRARWKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803292.11e-118PREDICTED: homeobox-leucine zipper protein ATHB-12-like
RefseqXP_016508631.11e-118PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1S4D5H41e-117A0A1S4D5H4_TOBAC; homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1U7YGQ41e-117A0A1U7YGQ4_NICSY; homeobox-leucine zipper protein ATHB-12-like
STRINGXP_009803292.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-31homeobox 7