PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01860g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB | ||||||||
Protein Properties | Length: 488aa MW: 52471.9 Da PI: 4.9743 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v ++G g+W+++ ++ g+ R++k+c++rw ++l Peinf101Scf01860g00002.1 37 KGPWTSAEDAILVEYVMKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 84 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 21.4 | 5.8e-07 | 90 | 118 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g++T eE+ +++++++++G++ W++ a++ Peinf101Scf01860g00002.1 90 KGAFTLEEERRIIELHAKMGNK-WARMAAE 118 799*******************.**99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.425 | 32 | 88 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 35 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-14 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 37 | 84 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.94E-24 | 38 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-11 | 39 | 84 | No hit | No description |
PROSITE profile | PS50090 | 6.121 | 85 | 124 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-12 | 88 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 20 | 89 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-5 | 90 | 117 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MSITSETDDW MTSKVDMDSP DEANGGGNVG GSLPLKKGPW TSAEDAILVE YVMKHGEGNW 60 NAVQKHSGLA RCGKSCRLRW ANHLRPDLKK GAFTLEEERR IIELHAKMGN KWARMAAENK 120 QNEELGGLSS TDAQHPGLVA TNNFDIPPVE FKNLELNQLL CPPAHVEIPA SGFLAQVHSA 180 PYSSTSLLST VHPSKRIRGS ESMFSGSNGD LFLASCQYQN GGSLLAQPLG FSSYNHNLTY 240 DGQQSFSNVI PGSHAPLNGN SSTSEPTWAL KVELPSLQNQ TANWDSLSSP LHSLESVDTL 300 IQSPLAGHSE SVSLSPRNSG LLDAVLYGSQ TMNSSKDNSK QAEEETSADA VGNSCPDLLE 360 KGWETYGDPI SPLSRLPASV FTECTPTTGN SLHELQSTST MPGCNVKQEN ADQAPSDGKD 420 DMLNQTIFAS NCSSPKTQHT KNNLALKNAF GSGFFDDYGW DCKQVHSVAT SSGQACGRDS 480 AWDAMSAM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-20 | 35 | 116 | 25 | 105 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158630.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X2 | ||||
TrEMBL | A0A4D6FBN6 | 0.0 | A0A4D6FBN6_PETHY; MYB33b | ||||
STRING | PGSC0003DMT400058426 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 1e-53 | myb domain protein 33 |