PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01853g05021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 314aa    MW: 34949 Da    PI: 9.8949
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01853g05021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19167200134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Peinf101Scf01853g05021.1 167 CSDCHTTKTPLWRSGPQGPKSLCNACGIRQRKAR 200
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-20161212IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.51E-13163201No hitNo description
PROSITE profilePS5011412.637165197IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-16165200IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.40E-13166198No hitNo description
PfamPF003202.4E-17167200IPR000679Zinc finger, GATA-type
PROSITE patternPS003440167192IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MIPTYRNSTS PFPFELNNEY DHDLNHPLVS PNYQVASSSS YSTCQTFYNS TTNQDQIGYY  60
HSEFYQSQHQ PEVDKYGSRS GSHGLEKKHG LKITLWKKGN RCENQNDKNP VKNLDRASME  120
ATSTKHTHIK MKLQDQKQHQ STSPLETTDH ASNSSSNNIN NIPIRVCSDC HTTKTPLWRS  180
GPQGPKSLCN ACGIRQRKAR RAMAAAAAAA ANGTNFTATE TSTAMKIKVQ QQKQKITKVN  240
TNHVVPFKKR CKFTSAAAGS SSSSSSNNNA QKKLCFEDFF INLSNNLAFH RVFPQDEKEA  300
AILLMALSSG LVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7475021e-39JQ747502.1 Nicotiana tabacum GATA-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488017.11e-120PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1S4BGN51e-118A0A1S4BGN5_TOBAC; putative GATA transcription factor 22
STRINGXP_009604300.11e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-18GATA family protein