PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01853g03001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 343aa    MW: 39976.1 Da    PI: 5.1398
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01853g03001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33501412102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Flkk++ei++d++++++isws ++ sfvv+d+++f+ ++Lpk+Fkhsnf+SF+RQLn+Y F+kv++++         weF+++ F
  Peinf101Scf01853g03001.1  50 FLKKTFEIVDDPNTDSIISWSCTKASFVVWDPHKFSIDLLPKHFKHSNFSSFIRQLNTYRFRKVDSDR---------WEFANEGF 125
                               9********************888*****************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +kgkk+ll++ikr+k+
  Peinf101Scf01853g03001.1 126 EKGKKHLLRNIKRRKQ 141
                               **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3646139IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.06E-3246139IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5346139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-175073IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-3050139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-1788100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-17101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSEQKTIVID EGNEGVAVKE EFIDEDYDNI NASALPKPLE GLHDVGPPPF LKKTFEIVDD  60
PNTDSIISWS CTKASFVVWD PHKFSIDLLP KHFKHSNFSS FIRQLNTYRF RKVDSDRWEF  120
ANEGFEKGKK HLLRNIKRRK QLLYPQNLQQ GGCCRDGIDQ AAELEKLDKD HDTLKMEVLR  180
LKQQQESTES YLATMKERLR SSETRQKYMV IFMAKAFKNP QHFMEKMKRR RTLDNTVVKK  240
RRLACETMDK DAGNSLQDQE EFTTNKSDIQ TLFTSDETSS PVEEQKTKFS SATNPDMLSE  300
NYILWEKLME DDMIYENIGV ETDTHQSDII LDQLEDLIAK PPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-214113917129Heat shock factor protein 1
5d5v_B1e-214113917129Heat shock factor protein 1
5d5v_D1e-214113917129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227241KRRRTLDNTVVKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802448.11e-159PREDICTED: heat stress transcription factor A-2-like
RefseqXP_009802449.11e-159PREDICTED: heat stress transcription factor A-2-like
RefseqXP_016515036.11e-159PREDICTED: heat stress transcription factor A-2-like
RefseqXP_016515037.11e-159PREDICTED: heat stress transcription factor A-2-like
RefseqXP_016515038.11e-159PREDICTED: heat stress transcription factor A-2-like
TrEMBLA0A1S4DNN41e-157A0A1S4DNN4_TOBAC; heat stress transcription factor A-2-like
TrEMBLA0A1U7YTA81e-157A0A1U7YTA8_NICSY; heat stress transcription factor A-2-like
STRINGXP_009802448.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-81heat shock transcription factor A2