PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf01838g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 328aa MW: 37644.8 Da PI: 9.9283 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3e-13 | 19 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Peinf101Scf01838g00001.1 19 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNNEDEAAKAYDIAAQRFRG 67 689***9788.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 98 | 5.8e-31 | 152 | 253 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+ tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+ Peinf101Scf01838g00001.1 152 FEKAVTPSDVGKLNRLVIPKQHAERYfplengKNASSNGLLLNFEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDI 236 89***************************987444457789******************************************** PP EEEEE-SSSEE..EEEE CS B3 80 vvFkldgrsefelvvkv 96 v F+++g +++l++ + Peinf101Scf01838g00001.1 237 VSFQRSGGLDKQLYIDW 253 ****9988666677665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.44E-16 | 19 | 75 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-8 | 19 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-24 | 19 | 74 | No hit | No description |
SMART | SM00380 | 1.2E-27 | 20 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-19 | 20 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.862 | 20 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-41 | 146 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-31 | 150 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-28 | 151 | 244 | No hit | No description |
PROSITE profile | PS50863 | 14.565 | 152 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-24 | 152 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-28 | 152 | 254 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
ADLINGIESA ESKNKLHSSR FKGVVPQPNG RWGAQIYEKH QRVWLGTFNN EDEAAKAYDI 60 AAQRFRGRDA VTNFKPLFDK QGEEIEISFL NSHSKAEIVD MLRKHTYNDE LEHSKKIYSF 120 DKNGNIRTCY KDGHVVSSFD IEKVNKAREL LFEKAVTPSD VGKLNRLVIP KQHAERYFPL 180 ENGKNASSNG LLLNFEDMNG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDIVSFQ 240 RSGGLDKQLY IDWKARSLST QIQVDQVQPA VKMLRLFGVN ICKVQDVSTN VVDDRNMMSS 300 CAAGKRIRGQ MELLAFEYSK KQRVIDAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-58 | 149 | 259 | 11 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009614561.1 | 1e-180 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Refseq | XP_016445426.1 | 1e-180 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | P82280 | 1e-130 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A1S3XZP8 | 1e-179 | A0A1S3XZP8_TOBAC; AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
STRING | XP_009614561.1 | 1e-179 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-132 | related to ABI3/VP1 2 |