PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01836g01009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 292aa MW: 32861.8 Da PI: 6.9628 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 14 | 64 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 +g+WT+eEd++l+ +++++G g +W++Ia++++ Rt++++k++w++ Peinf101Scf01836g01009.1 14 KGPWTPEEDQKLLSCIEEHGCGclsllyRWSAIAAYLP-SRTDNEIKNYWNS 64 79************************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.83E-16 | 5 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-24 | 9 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.884 | 9 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-14 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-17 | 14 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.44E-14 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGKSKCCDKE GLKKGPWTPE EDQKLLSCIE EHGCGCLSLL YRWSAIAAYL PSRTDNEIKN 60 YWNSRLKKKL TKMGIDPMTH KPKTDNGNSS QSKYVANLSH MAQWESARLE AEARLVRRSK 120 DSKMLFNNTH NYNQITSQPY YQLPCLDILK AWQRSSTKPT TNDINAMLLD GNFASRNKNL 180 ESSIPTTSNN FSGSVVMNNV ITTTTTTTTT TVGDNLPLSA INCLDQDLCP SNFMQEFSEL 240 FPEYNICAQN SENYSSGQLD NFMGGCSLDF EDNKYFSWNN FSHLVTSPVG SP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621431.1 | 1e-123 | PREDICTED: protein ODORANT1-like | ||||
TrEMBL | A0A1S4ACH7 | 1e-120 | A0A1S4ACH7_TOBAC; protein ODORANT1-like | ||||
TrEMBL | A0A1U7XKL3 | 1e-120 | A0A1U7XKL3_NICSY; protein ODORANT1-like | ||||
STRING | XP_009621431.1 | 1e-123 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 4e-38 | myb domain protein 16 |