PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01833g00017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 722aa    MW: 80052.6 Da    PI: 4.5507
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01833g00017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49e-10572613346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rW++++ el+++a +q+G++  ++I + ++ gRt+ q+ +++ k
  Peinf101Scf01833g00017.1 572 RWSKQDTELFYEAMQQFGTD-LSLIQQLFP-GRTRRQLYHKYKK 613
                               9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.2E-26563647No hitNo description
PROSITE profilePS512939.483568619IPR017884SANT domain
SMARTSM007177.5E-8569617IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-9571619IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-5572613IPR009057Homeodomain-like
CDDcd001672.64E-6572613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MDLLDDIFAD GAAKTAKVGG KFQPKAKPRP VKKGPAVASS AVSLTSKPSG DIATTGSSEA  60
LKTGKNPQNY SESSVLVEPS LEHPLAAEIF GPSVGSNLDT NTVIPDNNED RNSCFEKSEG  120
QTAEVCIGLD SFHDLLPHSS AIDPSAVHVG GAEKGQEQPS FPVSSIDDSA PSTKNIQPDE  180
VTAAEDPLTC QGSVVPISGS CQEVDTYPSS EADILGVTTT SGLSIRRFQP KSKLQVYRER  240
HDTSIPDSDV GESVSYQPDS QLGHSEMDFV DKGKEYGFPA DDVLDFSARG FDNNVITEST  300
HESPVHEEYG MEASHSDAGI PAEHPEASSQ IPEEPVPQRS KAKRQKLRAT NLSAISEENG  360
VGRSLRSRRK SVNANKLVDE PEEVIDDGEY VNDSVTNGND DDAENFLVEN ESQGKNVQRK  420
SKKTVTEEGK RVRKSKKTTE ASDQAANKKP KKFSHSSRQK RRRGKPRTSL ITVDKALLEA  480
PEDAIDYQKV PIKDLIILAE HKERLAKKDA AAAQIPSTDQ SVGASVSNYD EDETHPSDEG  540
EEDIDHQVRP TVQVTDVCFN YQTYMVKTPS TRWSKQDTEL FYEAMQQFGT DLSLIQQLFP  600
GRTRRQLYHK YKKEERQNPF RFHDALTNRS KDHSHFERVI ERLKQIEDEE LQKADNDESI  660
DLAGEEEVEG TQEINEEEAK SEQVEEKEVE AMEQDVQQME SPVKDYESED DFLKWSQYKS  720
EV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418436RKSKKTVTEEGKRVRKSKK
2458465QKRRRGKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761827.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X4
RefseqXP_009761828.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X4
TrEMBLA0A1U7V6110.0A0A1U7V611_NICSY; transcription factor TFIIIB component B'' isoform X4
STRINGXP_009761824.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.15e-48MYB_related family protein