PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01810g01006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TALE
Protein Properties Length: 447aa    MW: 49224.6 Da    PI: 5.7141
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01810g01006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69.1e-083964292154
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               k +yp++e++++L +++gL+ +q+ +WF N+R +
  Peinf101Scf01810g01006.1 396 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 429
                               569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-16147191IPR005540KNOX1
PfamPF037903.2E-16149190IPR005540KNOX1
SMARTSM012562.3E-15184232IPR005541KNOX2
PfamPF037912.9E-12193231IPR005541KNOX2
PfamPF037892.4E-6350371IPR005539ELK domain
SMARTSM011889.2E-4350371IPR005539ELK domain
PROSITE profilePS5121310.144350370IPR005539ELK domain
PROSITE profilePS5007111.742370433IPR001356Homeobox domain
SuperFamilySSF466894.71E-16372436IPR009057Homeodomain-like
SMARTSM003891.8E-11372437IPR001356Homeobox domain
CDDcd000869.52E-12373434No hitNo description
Gene3DG3DSA:1.10.10.603.4E-25377434IPR009057Homeodomain-like
PfamPF059201.1E-17390429IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDMQHFSDEN SGVLRSILPE QLAQSSPEVK PMEHQQQPPT WLNSAILRQE SQYTGTGARS  60
SGAGENNFLN LHSNSESSNQ WLSRSILQRN VSDVHQASND LKNDDDNNAG GGGGGGQLAE  120
SEVVGGGGGG SSSGTAAADG IVNWQNAGYK AEMLSHPLFE QLLSAHVACL RIATPVDQLP  180
RIDAQLAQSQ QTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGDDPITHFI  240
FNCLGSIDLK ELDLDKSGFH GTGDKSRVGG STNYITLPIY KVNIVSTYAA YAGVSPGEGT  300
GATMSDDEDD QVDSDANLFD GSLDGHDSMG FGPLIPTESE RSLMERVRQE LKHELKQGYK  360
EKLVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHAKWPYP TEEDKAKLVQ ETGLQLKQIN  420
NWFINQRKRN WHSNPSSSTA LKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13373437872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426446RKRNWHSNPSSSTALKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0047971e-179AB004797.1 Nicotiana tabacum NTH23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248511.11e-180PREDICTED: homeobox protein knotted-1-like 3 isoform X1
RefseqXP_019248514.11e-180PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-138KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1J6IVC51e-178A0A1J6IVC5_NICAT; Homeobox protein knotted-1-like 3
STRINGXP_009784535.11e-174(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-129KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]