PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01775g06028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 273aa MW: 30097.9 Da PI: 8.1124 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.8 | 1.7e-19 | 191 | 225 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l Peinf101Scf01775g06028.1 191 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 225 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.057 | 185 | 221 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.9E-18 | 185 | 239 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-15 | 187 | 248 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.3E-15 | 188 | 223 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.91E-15 | 190 | 238 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 191 | 216 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.5E-17 | 191 | 225 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MKMEALDPSA VACFLDDEDD LLNFSLQDDD DDNNNYQNTP ASSSSNPLVS SLLPHHHPEC 60 VEEELEWLSN KDAFPAVEFG ILSDNPGIMF DHHSPVSVLE NSSSTSNSSG NGITNGNAYM 120 SCCGSLKVPV NYPVRARSKR RRRRRRGGLT DVPIEHCMSV NPPIFKNTKQ RQPLLSLPMN 180 SAKSASIGRR CQHCGVDKTP QWRAGPMGPK TLCNACGVRY KSGRLLPEYR PANSPTFSAD 240 VHSNSHRKVL EMRKQKVGVG GMMIHEACGY RVG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 145 | RSKRRRRRRR |
2 | 138 | 143 | KRRRRR |
3 | 139 | 145 | RRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB107690 | 0.0 | AB107690.1 Nicotiana tabacum AGP2 mRNA for AG-motif binding protein-2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312074.1 | 1e-150 | GATA transcription factor 1-like | ||||
Swissprot | Q8LAU9 | 8e-44 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | Q76DY2 | 1e-148 | Q76DY2_TOBAC; AG-motif binding protein-2 | ||||
STRING | XP_009767386.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-44 | GATA transcription factor 1 |