PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01775g06028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 273aa    MW: 30097.9 Da    PI: 8.1124
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01775g06028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-19191225135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Peinf101Scf01775g06028.1 191 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 225
                               *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.057185221IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-18185239IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-15187248No hitNo description
Gene3DG3DSA:3.30.50.106.3E-15188223IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.91E-15190238No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003202.5E-17191225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKMEALDPSA VACFLDDEDD LLNFSLQDDD DDNNNYQNTP ASSSSNPLVS SLLPHHHPEC  60
VEEELEWLSN KDAFPAVEFG ILSDNPGIMF DHHSPVSVLE NSSSTSNSSG NGITNGNAYM  120
SCCGSLKVPV NYPVRARSKR RRRRRRGGLT DVPIEHCMSV NPPIFKNTKQ RQPLLSLPMN  180
SAKSASIGRR CQHCGVDKTP QWRAGPMGPK TLCNACGVRY KSGRLLPEYR PANSPTFSAD  240
VHSNSHRKVL EMRKQKVGVG GMMIHEACGY RVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136145RSKRRRRRRR
2138143KRRRRR
3139145RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076900.0AB107690.1 Nicotiana tabacum AGP2 mRNA for AG-motif binding protein-2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312074.11e-150GATA transcription factor 1-like
SwissprotQ8LAU98e-44GATA1_ARATH; GATA transcription factor 1
TrEMBLQ76DY21e-148Q76DY2_TOBAC; AG-motif binding protein-2
STRINGXP_009767386.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-44GATA transcription factor 1