PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01775g06022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 363aa    MW: 40862.6 Da    PI: 8.5951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01775g06022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05628123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C+k F r  nL+ H r H
  Peinf101Scf01775g06022.1  6 YVCEVCHKGFQRDQNLQLHRRGH 28
                              9********************88 PP
2zf-C2H212.40.0004889111123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k++  +s+ k H + +
  Peinf101Scf01775g06022.1  89 WKCDKCSKRYAVQSDWKAHSKIC 111
                               58*****************9876 PP
3zf-C2H211.30.0011119137523
                               TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                               dCg+ Fsrk+++++H   +
  Peinf101Scf01775g06022.1 119 DCGTIFSRKDSFVTHRAFC 137
                               9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.56E-7528No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
SMARTSM003550.031628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551105484IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-577110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.56E-784109No hitNo description
SMARTSM0035514089109IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MATNRYVCEV CHKGFQRDQN LQLHRRGHNL PWKLKSRPNN NNGSGQGPVK KRVYVCPEPN  60
CVHHDPSRAL GDLTGIKKHY CRKHGEKKWK CDKCSKRYAV QSDWKAHSKI CGTREYRCDC  120
GTIFSRKDSF VTHRAFCDAL TEENRNLSAN ATGSRMLQNQ SLSFPNYLNT NTNINSHENF  180
DNNIPHGMMK MTPSYNVDSS ANNNSPLVAT ASAFTSATAL LQKAAEMGAR ISDNTIAPIL  240
LKGFTGYNNS PIVNVNLSSS SVEESGHSNY SRTVGSGLYV GNFEVPFEKI MVMNSEDSNN  300
NATQVMMGGS EKLTVDFLGV ATGDNERKRR YDGDNMVGLD YLKLHEEQEY RHHHSMHELQ  360
SEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-3585149367Zinc finger protein JACKDAW
5b3h_F8e-3585149367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027120674.11e-131zinc finger protein GAI-ASSOCIATED FACTOR 1-like
TrEMBLA0A103XCG91e-131A0A103XCG9_CYNCS; Uncharacterized protein
STRINGGorai.005G198100.11e-130(Gossypium raimondii)
STRINGEOX995611e-130(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1590056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-89indeterminate(ID)-domain 2