PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01775g00038.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 487aa MW: 56494.2 Da PI: 9.4021

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01775g00038.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.9	4.6e-25	58	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + +ks++++ i+ + fvCskeg+r+++ k ++r++ +tr gCk + v+k+++g+w + +l++ H Peinf101Scf01775g00038.1 58 NFYLDYAHRNGFSVRRGRVTKSRKDKLIIGQVFVCSKEGFRSKKYFK---NNRPQDVTREGCKVLIYVSKKEEGTWAIRRLVSGH 139 6***************************************99877...999**************************** PP FAR1 86 nHela 90 nHela Peinf101Scf01775g00038.1 140 NHELA 144 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-22	58	144	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.744	275	311	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-6	283	310	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.8E-5	286	313	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MEISNSEDDQ HIKGVEVASE EIESDTDKTM RTVPDLGVEN QREPYIGMEF SSLDDSFNFY 60 LDYAHRNGFS VRRGRVTKSR KDKLIIGQVF VCSKEGFRSK KYFKNNRPQD VTREGCKVLI 120 YVSKKEEGTW AIRRLVSGHN HELATPSSQK FLRSKRKKSE AQKNLIDLLD DSGVRPDYLN 180 SSTPMSVFVV QYDKAIDARY DKIREQEYKT KCSNPILKTL YPMEDEAAKA YTRKIFKIFR 240 DELVFSQKFV SEKIEVKDGM HIYKVHEFER QKPAYIVTLN VASRSAVCSC HKFEFLGILC 300 RHVLMIFIKK KIHSLPTYYL LDRWTRNATK EKVDDYPNET HKLRPALWFN NIMMHSIGLS 360 ERATRSEKHY QLAHQRVLQL CEELDELSYE FEEDCAKVSE SNLELNSLEK SHITLLDPPQ 420 AATKGRPRSL RMKGGLESTR KTQKSSSQRQ KGQRKSTKHE SKGTSSNSYV EAEQFNTTTL 480 LSEAHAM

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MEISNSEDDQ HIKGVEVASE EIESDTDKTM RTVPDLGVEN QREPYIGMEF SSLDDSFNFY  60
LDYAHRNGFS VRRGRVTKSR KDKLIIGQVF VCSKEGFRSK KYFKNNRPQD VTREGCKVLI  120
YVSKKEEGTW AIRRLVSGHN HELATPSSQK FLRSKRKKSE AQKNLIDLLD DSGVRPDYLN  180
SSTPMSVFVV QYDKAIDARY DKIREQEYKT KCSNPILKTL YPMEDEAAKA YTRKIFKIFR  240
DELVFSQKFV SEKIEVKDGM HIYKVHEFER QKPAYIVTLN VASRSAVCSC HKFEFLGILC  300
RHVLMIFIKK KIHSLPTYYL LDRWTRNATK EKVDDYPNET HKLRPALWFN NIMMHSIGLS  360
ERATRSEKHY QLAHQRVLQL CEELDELSYE FEEDCAKVSE SNLELNSLEK SHITLLDPPQ  420
AATKGRPRSL RMKGGLESTR KTQKSSSQRQ KGQRKSTKHE SKGTSSNSYV EAEQFNTTTL  480
LSEAHAM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-127	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	1e-125	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	0.0	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-124	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-34	FAR1-related sequence 5