PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01733g02001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 411aa MW: 44831.5 Da PI: 9.7069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01733g02001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	176	198	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ + H + H Peinf101Scf01733g02001.1 176 TCHKCGEQFVKWEAVEAHHLSkH 198 8*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	177	198	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.25E-23	200	410	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.6E-8	204	403	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MPAVWFALKR SLQCKSELSD VHDPSYDGKN LAKISTKKTT NIRSGCSRSI ANLKDVIHGS 60 KRHNMEKPPI QSPRSIGSSE LLNPITHEVV LSNSTCELKI TSCNFQDSNG SSVESISAFM 120 GTPQIGPSRK NRGFGSPIRK GSPGNLSRKT GSGFGGIVSR PKASSGVNSH EFSALTCHKC 180 GEQFVKWEAV EAHHLSKHAV TELVEGDSSR KIVEIICRTS CSKPENNNSN GIERILKVHN 240 MQKILAQFEE YRELVKIKAS KLSKKHPRCL ADGNELLRFF GTTVKCSLGM NGSSSLCVSE 300 DCKVCRILRH GFSIKKEMNG GIGVFTASTS GRALGAIEEN NDYNVSLRKA LIVCRVIAGR 360 VHRPLENVQE LIGQSGFDSL AGKVGVYSNI EELYLLNPKA LLPCFVVICK S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MPAVWFALKR SLQCKSELSD VHDPSYDGKN LAKISTKKTT NIRSGCSRSI ANLKDVIHGS  60
KRHNMEKPPI QSPRSIGSSE LLNPITHEVV LSNSTCELKI TSCNFQDSNG SSVESISAFM  120
GTPQIGPSRK NRGFGSPIRK GSPGNLSRKT GSGFGGIVSR PKASSGVNSH EFSALTCHKC  180
GEQFVKWEAV EAHHLSKHAV TELVEGDSSR KIVEIICRTS CSKPENNNSN GIERILKVHN  240
MQKILAQFEE YRELVKIKAS KLSKKHPRCL ADGNELLRFF GTTVKCSLGM NGSSSLCVSE  300
DCKVCRILRH GFSIKKEMNG GIGVFTASTS GRALGAIEEN NDYNVSLRKA LIVCRVIAGR  360
VHRPLENVQE LIGQSGFDSL AGKVGVYSNI EELYLLNPKA LLPCFVVICK S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240427.1	0.0	PREDICTED: uncharacterized protein LOC109220407
TrEMBL	A0A1J6KEA0	0.0	A0A1J6KEA0_NICAT; Uncharacterized protein
STRING	XP_009765356.1	0.0	(Nicotiana sylvestris)
STRING	XP_009588899.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-161	C2H2 family protein