PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01733g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27824.7 Da PI: 6.4032 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00031 | 104 | 139 | 16 | 54 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i f+eL ++l + +++K +K+ iL Av+ + +L Peinf101Scf01733g00012.1 104 ISLLFQELSSILEPG---KQPKIDKSVILGDAVRMVVQL 139 55679*********9...9**************987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.72E-4 | 76 | 144 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-9 | 79 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.74E-6 | 104 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 7.7E-4 | 154 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAAAEEDGSN WLIELGLMED LIPSLQPNDH SQWPSNAFSL PNNLSSGLDD SYGNSDILKE 60 CGSKKRVRSG GCASDSKAHR EKMRRDRLND RHTLSFPPSL VLCISLLFQE LSSILEPGKQ 120 PKIDKSVILG DAVRMVVQLR DEAQKLKESY DTLQEKVNEL KAEKNELRDE KQKLKAEKDK 180 LEQHLKALNT QPGFLPHTPT MPAPFSAPHQ VYASKMMPYV GYPGIPMWQF VPPAAVDTSE 240 DHALRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC158307 | 1e-140 | KC158307.1 Solanum lycopersicum AFLP fragment TGG1, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232754.1 | 1e-148 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 4e-75 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2G2XFE3 | 1e-151 | A0A2G2XFE3_CAPBA; Transcription factor ILR3 | ||||
STRING | Solyc02g079970.2.1 | 1e-148 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-77 | bHLH family protein |