PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01670g02018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 270aa    MW: 29246.8 Da    PI: 4.9621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01670g02018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001243266123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                               + C+ C+++F +   L++H +  H
  Peinf101Scf01670g02018.1 243 HACTTCNRTFGSDKALESHSKAkH 266
                               67*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.98E-5232265No hitNo description
PROSITE profilePS5015710.866243270IPR007087Zinc finger, C2H2
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MALSEFTYIG EEVKSGQTLS VQPGEDNVIH ITQASLGETK KDKGSENVYL SVVADGKKLI  60
LGTLHSELRQ QQFDLLFNKD FELSHSWKGG SVYFFGYNIA YACQTEKAEA QIEAAVRAAA  120
ENRKAKIAES SKDAKADDKE DTDDDEDEDD SDTGEDEDDS DEDQSDEESE ETPKKAEPSK  180
KRPADSATKT PAPEKKAKFV TPQKTDGKKG AVHVDTPHPA KQAGKSKTPG NKPNHTPNSG  240
GSHACTTCNR TFGSDKALES HSKAKHSAGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338944.11e-106PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I62e-73HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A0V0HRY41e-106A0A0V0HRY4_SOLCH; Putative histone deacetylase HDT1-like
STRINGPGSC0003DMT4000216441e-106(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-23histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]