PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01658g01011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 334aa    MW: 36869.6 Da    PI: 6.5097
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01658g01011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17238271134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Peinf101Scf01658g01011.1 238 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 271
                               99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.5E-743327IPR016679Transcription factor, GATA, plant
SMARTSM004017.9E-16232282IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503232268IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15236295No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14236269IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.10E-13237284No hitNo description
PROSITE patternPS003440238263IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15238271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGPNLVEEID CGNFFDQIDD LIEFPEENEC VGLSSTDCKD FPIIWDQPLP DSDPLFSDNS  60
PSDLSAELSV PYEDIVQLEW LSTFVEDSFS CGGLTLGKEN ALTINKETSH SKFQSSSPVS  120
VLESSSSSSS SSCSGGKRIP LSPYHHGPQR ARSKRPRPAT FNPRPAIQLI SPSVFIENPR  180
PFVVPVASSE SETFAQSPMK KFPQPPVAEQ KKKKIKLTFP LALIETNQNS TAQALRKCMH  240
CEITKTPQWR AGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFVPSLHS NSHKKVIEMR  300
NEDIPENNAT ARTPIRAKTT RLEVNPSSKS SVED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760862.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_009760863.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016497965.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016497966.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1S4CA081e-180A0A1S4CA08_TOBAC; GATA transcription factor
TrEMBLA0A1U7UXU61e-180A0A1U7UXU6_NICSY; GATA transcription factor
STRINGXP_009760862.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein