PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01652g00017.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB

Protein Properties

Length: 1056aa MW: 116270 Da PI: 5.4076

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01652g00017.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.3	1.8e-18	123	169	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+++v+ +G++ W+t+a+++ gR +kqc++rw+++l Peinf101Scf01652g00017.1 123 KGSWSKEEDEILIELVNTYGSKKWSTVAQHLA-GRIGKQCRERWHNHL 169 799***************************.***********97 PP
2	Myb_DNA-binding	44.8	2.9e-14	175	217	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+ E++ l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Peinf101Scf01652g00017.1 175 KEAWTQGEELALIRAHQIYGNK-WAELSKVLP-GRTDNAIKNHWN 217 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.111	81	117	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.5E-10	98	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	29.985	118	173	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-30	120	216	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-18	122	171	IPR001005	SANT/Myb domain
CDD	cd00167	1.50E-15	125	169	No hit	No description
Pfam	PF13921	2.6E-17	126	183	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-25	130	176	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.02	174	224	IPR017930	Myb domain
SMART	SM00717	2.3E-14	174	222	IPR001005	SANT/Myb domain
CDD	cd00167	9.76E-11	177	217	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-20	177	224	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence Send to blast
MFIDQEMKRS GMDNLICDSV KLKIFTHFHN QRLPVSFVFT SRFGDLPLSQ ATMESDKTST 60 TPPDGISCPQ GVRPSHGRTS GPKRRSRQWN AEESLLAAEC FKDRTDVQCL HRWQKVLDPE 120 LVKGSWSKEE DEILIELVNT YGSKKWSTVA QHLAGRIGKQ CRERWHNHLN PAINKEAWTQ 180 GEELALIRAH QIYGNKWAEL SKVLPGRTDN AIKNHWNSSV KKKLDSYWAS GLLAQFPSLS 240 NINHQSQSIP SSSIKLLHNS EDESVHQDGI VKEEVSECSQ GSPFAGCSHS TSDLGNTFVH 300 VRENDKMSEE SLNKKNASSS AAPCSRNSTP AFHDVSCSLL EVPTELVDSR FLQDNYSHDL 360 GNSMGKDWQF NRDDIPNISL EVIQESSGLF THLLNCNENH NMVPFSLQTL TGFGTANAGN 420 LVEGPYRPNE MFSSVDGCRI IHPAEGISQC SPYETGVNGN GEPEDSLSYQ SSNYPILETR 480 DMAPQNCNAS SLHDFEASCH QAFSVHSQFS SENRSIVFGI ASNHPHISPL ENPVQESFTS 540 GCDGFIYPSE SAAPADNGTD NSFLSDRLDH TNDSCRLVSV NDLGSTTSTT VQKGLLNENT 600 FVPEEQKDGG ALCYEPPRFP SLDVPFLSCD LIQSGSDTQQ EYSPLGIRQL MMTSANCLTP 660 LRLWDSPSRD DSPDAILKSA AKTFTWTPSI LKKRHRHLVT PLSEKRCEKR LEKDFNQESF 720 SYMTVEFSRP QDMFDESANE KASTEDKENG HPSSEAGRKE EGDGVTGLSC CGNSERQLDG 780 GAHYRKEPHG KSAGANDGMG NVKQPPGVLV ELSSNDLFFS PDRVLVKCDR ATSLSNKALA 840 NHYARRLEAA SNQVTVSSSF ETSCSSVGCS PGVRGKCRSS FVIATSTALE NTAENSENGF 900 CAETESIFGE TPFKRSIESP SAWKSPWFMN SFLPSPRCDA ELAFEDIALF MSPGDRSYDA 960 IGLMKQLSEQ TAASIADAHQ ILGNDTPETI LLQTNSKKQR ADENCSLLAS NAVSERRTLD 1020 FSECGGTPPA KGKGTTKFDS GTSFSSPSSY LLKCCR

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence Send to blast

MFIDQEMKRS GMDNLICDSV KLKIFTHFHN QRLPVSFVFT SRFGDLPLSQ ATMESDKTST  60
TPPDGISCPQ GVRPSHGRTS GPKRRSRQWN AEESLLAAEC FKDRTDVQCL HRWQKVLDPE  120
LVKGSWSKEE DEILIELVNT YGSKKWSTVA QHLAGRIGKQ CRERWHNHLN PAINKEAWTQ  180
GEELALIRAH QIYGNKWAEL SKVLPGRTDN AIKNHWNSSV KKKLDSYWAS GLLAQFPSLS  240
NINHQSQSIP SSSIKLLHNS EDESVHQDGI VKEEVSECSQ GSPFAGCSHS TSDLGNTFVH  300
VRENDKMSEE SLNKKNASSS AAPCSRNSTP AFHDVSCSLL EVPTELVDSR FLQDNYSHDL  360
GNSMGKDWQF NRDDIPNISL EVIQESSGLF THLLNCNENH NMVPFSLQTL TGFGTANAGN  420
LVEGPYRPNE MFSSVDGCRI IHPAEGISQC SPYETGVNGN GEPEDSLSYQ SSNYPILETR  480
DMAPQNCNAS SLHDFEASCH QAFSVHSQFS SENRSIVFGI ASNHPHISPL ENPVQESFTS  540
GCDGFIYPSE SAAPADNGTD NSFLSDRLDH TNDSCRLVSV NDLGSTTSTT VQKGLLNENT  600
FVPEEQKDGG ALCYEPPRFP SLDVPFLSCD LIQSGSDTQQ EYSPLGIRQL MMTSANCLTP  660
LRLWDSPSRD DSPDAILKSA AKTFTWTPSI LKKRHRHLVT PLSEKRCEKR LEKDFNQESF  720
SYMTVEFSRP QDMFDESANE KASTEDKENG HPSSEAGRKE EGDGVTGLSC CGNSERQLDG  780
GAHYRKEPHG KSAGANDGMG NVKQPPGVLV ELSSNDLFFS PDRVLVKCDR ATSLSNKALA  840
NHYARRLEAA SNQVTVSSSF ETSCSSVGCS PGVRGKCRSS FVIATSTALE NTAENSENGF  900
CAETESIFGE TPFKRSIESP SAWKSPWFMN SFLPSPRCDA ELAFEDIALF MSPGDRSYDA  960
IGLMKQLSEQ TAASIADAHQ ILGNDTPETI LLQTNSKKQR ADENCSLLAS NAVSERRTLD  1020
FSECGGTPPA KGKGTTKFDS GTSFSSPSSY LLKCCR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	6e-57	83	224	18	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	6e-57	83	224	18	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546938.1	0.0	PREDICTED: myb-related protein 3R-1-like
TrEMBL	A0A1U8EI96	0.0	A0A1U8EI96_CAPAN; myb-related protein 3R-1-like
TrEMBL	A0A2G2YI29	0.0	A0A2G2YI29_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400047825	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3107	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	1e-176	Homeodomain-like protein