PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01648g01013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YA | ||||||||
Protein Properties | Length: 364aa MW: 40597.5 Da PI: 8.7793 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.9 | 1.2e-31 | 212 | 268 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e ekk +k+rkpylheSRh+hA+rR+Rg+gGrF Peinf101Scf01648g01013.1 212 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 268 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.0E-36 | 210 | 271 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.039 | 211 | 271 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.9E-27 | 213 | 268 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-24 | 214 | 236 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 216 | 236 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.3E-24 | 245 | 268 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MPTIAKHDGR QLETGLRITS QSTTQMQPWW QGYGENTMPL ASESTIAQGN PDGGNQEKET 60 KALAIESGIF HITYYTVNIS SLYLSFESTI RLTSDDNSCE KKVTMLIMTK LSCSYLFRTM 120 ICMWLFISDE IIFSGSNGNN VPYQQNLKHI ASTAATVMGE QQKEHAGHST MLASYPYPDL 180 QYGAMMTYGA PVHPHLFEIH HGRMPLPLDM EEEPVYVNAK QYHGILRRRQ IRAKAELEKK 240 AIKARKPYLH ESRHQHAMRR ARGTGGRFLN TKKLNDMDCT SEDPKKSGAT IPTHSGNSSG 300 SGSSDQQEKD MHKGHSHSFL TGNNHGSSVY LSQNTGNEQG NGHYGRVSWS LLVNQASRGA 360 VSNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 212 | 273 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM489763 | 0.0 | AM489763.1 Petunia x hybrida partial mRNA for YA3 (nf-YA gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443427.1 | 1e-143 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
TrEMBL | A0A1S3XUQ6 | 1e-142 | A0A1S3XUQ6_TOBAC; nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
STRING | PGSC0003DMT400017698 | 1e-129 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11232 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 3e-28 | nuclear factor Y, subunit A7 |