PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01645g01038.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 909aa    MW: 101608 Da    PI: 9.9577
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01645g01038.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376e-121771799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              ++pk+fa+++ ++ ++     le +sg++Wev++    + g+++l+kGW++F +   ++ g f++F ++g+s f  +v++f+ 
  Peinf101Scf01645g01038.1  1 TIPKDFATRYCKNMQT--PAYLEVPSGQVWEVEV--VHSEGQIWLAKGWQDFSDYYSIDCGHFLMFGYNGSSHF--NVTIFDV 77
                              59********555434..59**************..999999**************************999999..9999985 PP

2B349.48.5e-16321399486
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                + ps+v++  +l++p kfa++h +++ +   l+l+ +   sW+vk+  + +     + +GWk Fv +n+Lk gD +vF++++
  Peinf101Scf01645g01038.1 321 FMQPSYVNSPFNLSVPLKFAKKHFLENYG--NLVLRVRGRGSWSVKC--TPSTINAKIHSGWKAFVLDNNLKLGDACVFEVIK 399
                               6789*******************877655..6***************..999999*************************765 PP

3B347.24.1e-156236911488
                               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               ++ +++  fa++h ++   s +l+l+ +   sW+ k+  +k++ +  +++GWk Fv +n+Lk+gD++vF++++ +
  Peinf101Scf01645g01038.1 623 CWQTISSAFAQKHFHE--DSGDLVLRVPGRGSWSAKY--TKSKAK--IRSGWKTFVLDNKLKVGDVCVFEVINGT 691
                               677999*******755..5568***************..888755..9**********************88633 PP

4B343.36.6e-14812900798
                               .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                        B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                               ps+ +   +l ++  fa+++ ++  ++ +l+l+     sW+v++  + +     + +GWk Fv +n+Lk gD++vF++++  ++ 
  Peinf101Scf01645g01038.1 812 PSYLSIPYILNISSAFAQKYLLE-DCG-DLVLRVIGRGSWSVRC--SIGTADAKIHSGWKAFVLDNKLKIGDVCVFEVIKGtDQV 892
                               44444447899*********665.354.9***************..77777888***********************98654555 PP

                               ..EEEEE- CS
                        B3  91 elvvkvfr 98 
                                  v++fr
  Peinf101Scf01645g01038.1 893 FIDVTIFR 900
                               56666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.044178IPR003340B3 DNA binding domain
CDDcd100171.35E-9176No hitNo description
PfamPF023621.1E-8176IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366178IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-16278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-15278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-21310401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-18311401IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-18316410No hitNo description
SMARTSM010197.2E-11318412IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576318412IPR003340B3 DNA binding domain
PfamPF023628.2E-14320399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-18572700IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.35610702IPR003340B3 DNA binding domain
SMARTSM010192.9E-10614702IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-16614700IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-15622700No hitNo description
PfamPF023621.7E-12623691IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-20798901IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-18799901IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-16804900No hitNo description
SMARTSM010192.1E-9805902IPR003340B3 DNA binding domain
PROSITE profilePS5086311.688806902IPR003340B3 DNA binding domain
PfamPF023628.6E-11821897IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
TIPKDFATRY CKNMQTPAYL EVPSGQVWEV EVVHSEGQIW LAKGWQDFSD YYSIDCGHFL  60
MFGYNGSSHF NVTIFDVSAS EIGYPCDAVH GTCRAAKRDE SDNSIEILED IPRSHGAKGK  120
YSDFVERSVK IRGHIPLGHS SKRRKQERDA EDDVSVDMQD VASPSFTRNC QKIEYPHSAV  180
HGTGRAPKRG QIKSGDSIEI LEDIPNSHKG KAKIYDIAQS VENLIHSPLG QSNKRKRQGG  240
DDHDVSVDML TKRMEVEKSQ EDVASPSFTK KGRKGSEGCM KHKQKNKIVH NANKRVMNKE  300
RAIAYQRARA FKSKNPFIIS FMQPSYVNSP FNLSVPLKFA KKHFLENYGN LVLRVRGRGS  360
WSVKCTPSTI NAKIHSGWKA FVLDNNLKLG DACVFEVIKG IKLIDITIFP AAGSKPRHNI  420
GGGEVPGVSD SKNRIDKTDI SVPGSQSKVV LTNKLKLPRG GSYGFNSKII EGYGKCTEIK  480
HSVGRLGHCP VGQGSTQKRH ETDVDDVSID VRTKRVKVEE SPKDAASPSF TRKTKKSAEN  540
SWMQKQKSKV VYDKNKTVID KERAIAYQRA KAFKSTNPFL VSFMQPSYLS KPYNLVSFID  600
FPIIFIQFIW MHVVMLNLLC PSCWQTISSA FAQKHFHEDS GDLVLRVPGR GSWSAKYTKS  660
KAKIRSGWKT FVLDNKLKVG DVCVFEVING TKLIDVTIFP AAGSTPIQKI AEVSGNHDEY  720
NEGAEIEHSV EILANRLSGQ GNKRKGVEES QENVASPSFT RKIKKSCRAH EQQSKVVSDK  780
SKTVMDKERT IAYQRAKAFQ SKNPFIISFM QPSYLSIPYI LNISSAFAQK YLLEDCGDLV  840
LRVIGRGSWS VRCSIGTADA KIHSGWKAFV LDNKLKIGDV CVFEVIKGTD QVFIDVTIFR  900
AAESTSMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1929190321144B3 domain-containing transcription factor VRN1
4i1k_B4e-1929190321144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018632328.10.0PREDICTED: uncharacterized protein LOC104113621 isoform X1
TrEMBLA0A1S4A9620.0A0A1S4A962_TOBAC; B3 domain-containing protein Os03g0619600-like
STRINGXP_009622136.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein