PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf01645g01038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 909aa MW: 101608 Da PI: 9.9577 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 6e-12 | 1 | 77 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++pk+fa+++ ++ ++ le +sg++Wev++ + g+++l+kGW++F + ++ g f++F ++g+s f +v++f+ Peinf101Scf01645g01038.1 1 TIPKDFATRYCKNMQT--PAYLEVPSGQVWEVEV--VHSEGQIWLAKGWQDFSDYYSIDCGHFLMFGYNGSSHF--NVTIFDV 77 59********555434..59**************..999999**************************999999..9999985 PP | |||||||
2 | B3 | 49.4 | 8.5e-16 | 321 | 399 | 4 | 86 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + ps+v++ +l++p kfa++h +++ + l+l+ + sW+vk+ + + + +GWk Fv +n+Lk gD +vF++++ Peinf101Scf01645g01038.1 321 FMQPSYVNSPFNLSVPLKFAKKHFLENYG--NLVLRVRGRGSWSVKC--TPSTINAKIHSGWKAFVLDNNLKLGDACVFEVIK 399 6789*******************877655..6***************..999999*************************765 PP | |||||||
3 | B3 | 47.2 | 4.1e-15 | 623 | 691 | 14 | 88 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ +++ fa++h ++ s +l+l+ + sW+ k+ +k++ + +++GWk Fv +n+Lk+gD++vF++++ + Peinf101Scf01645g01038.1 623 CWQTISSAFAQKHFHE--DSGDLVLRVPGRGSWSAKY--TKSKAK--IRSGWKTFVLDNKLKVGDVCVFEVINGT 691 677999*******755..5568***************..888755..9**********************88633 PP | |||||||
4 | B3 | 43.3 | 6.6e-14 | 812 | 900 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ps+ + +l ++ fa+++ ++ ++ +l+l+ sW+v++ + + + +GWk Fv +n+Lk gD++vF++++ ++ Peinf101Scf01645g01038.1 812 PSYLSIPYILNISSAFAQKYLLE-DCG-DLVLRVIGRGSWSVRC--SIGTADAKIHSGWKAFVLDNKLKIGDVCVFEVIKGtDQV 892 44444447899*********665.354.9***************..77777888***********************98654555 PP ..EEEEE- CS B3 91 elvvkvfr 98 v++fr Peinf101Scf01645g01038.1 893 FIDVTIFR 900 56666666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.044 | 1 | 78 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.35E-9 | 1 | 76 | No hit | No description |
Pfam | PF02362 | 1.1E-8 | 1 | 76 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 1 | 78 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.49E-16 | 2 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-15 | 2 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-21 | 310 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-18 | 311 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.40E-18 | 316 | 410 | No hit | No description |
SMART | SM01019 | 7.2E-11 | 318 | 412 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 318 | 412 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-14 | 320 | 399 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-18 | 572 | 700 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.35 | 610 | 702 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-10 | 614 | 702 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-16 | 614 | 700 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-15 | 622 | 700 | No hit | No description |
Pfam | PF02362 | 1.7E-12 | 623 | 691 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-20 | 798 | 901 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-18 | 799 | 901 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-16 | 804 | 900 | No hit | No description |
SMART | SM01019 | 2.1E-9 | 805 | 902 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.688 | 806 | 902 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-11 | 821 | 897 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 909 aa Download sequence Send to blast |
TIPKDFATRY CKNMQTPAYL EVPSGQVWEV EVVHSEGQIW LAKGWQDFSD YYSIDCGHFL 60 MFGYNGSSHF NVTIFDVSAS EIGYPCDAVH GTCRAAKRDE SDNSIEILED IPRSHGAKGK 120 YSDFVERSVK IRGHIPLGHS SKRRKQERDA EDDVSVDMQD VASPSFTRNC QKIEYPHSAV 180 HGTGRAPKRG QIKSGDSIEI LEDIPNSHKG KAKIYDIAQS VENLIHSPLG QSNKRKRQGG 240 DDHDVSVDML TKRMEVEKSQ EDVASPSFTK KGRKGSEGCM KHKQKNKIVH NANKRVMNKE 300 RAIAYQRARA FKSKNPFIIS FMQPSYVNSP FNLSVPLKFA KKHFLENYGN LVLRVRGRGS 360 WSVKCTPSTI NAKIHSGWKA FVLDNNLKLG DACVFEVIKG IKLIDITIFP AAGSKPRHNI 420 GGGEVPGVSD SKNRIDKTDI SVPGSQSKVV LTNKLKLPRG GSYGFNSKII EGYGKCTEIK 480 HSVGRLGHCP VGQGSTQKRH ETDVDDVSID VRTKRVKVEE SPKDAASPSF TRKTKKSAEN 540 SWMQKQKSKV VYDKNKTVID KERAIAYQRA KAFKSTNPFL VSFMQPSYLS KPYNLVSFID 600 FPIIFIQFIW MHVVMLNLLC PSCWQTISSA FAQKHFHEDS GDLVLRVPGR GSWSAKYTKS 660 KAKIRSGWKT FVLDNKLKVG DVCVFEVING TKLIDVTIFP AAGSTPIQKI AEVSGNHDEY 720 NEGAEIEHSV EILANRLSGQ GNKRKGVEES QENVASPSFT RKIKKSCRAH EQQSKVVSDK 780 SKTVMDKERT IAYQRAKAFQ SKNPFIISFM QPSYLSIPYI LNISSAFAQK YLLEDCGDLV 840 LRVIGRGSWS VRCSIGTADA KIHSGWKAFV LDNKLKIGDV CVFEVIKGTD QVFIDVTIFR 900 AAESTSMLL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 4e-19 | 291 | 903 | 21 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-19 | 291 | 903 | 21 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018632328.1 | 0.0 | PREDICTED: uncharacterized protein LOC104113621 isoform X1 | ||||
TrEMBL | A0A1S4A962 | 0.0 | A0A1S4A962_TOBAC; B3 domain-containing protein Os03g0619600-like | ||||
STRING | XP_009622136.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-21 | B3 family protein |