PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01593g03019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | Nin-like | ||||||||
Protein Properties | Length: 303aa MW: 35165.9 Da PI: 7.1805 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 55.6 | 1e-17 | 129 | 176 | 4 | 51 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 i+ e l+++F ++ k+AAk L v+ ++LKr CR+y I+RWPh k ++ Peinf101Scf01593g03019.1 129 GITREILEQHFGMERKEAAKALHVSISTLKRMCREYDISRWPHHKTRK 176 6999***************************************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 13.947 | 111 | 197 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.5E-18 | 130 | 176 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.5E-15 | 211 | 300 | No hit | No description |
PROSITE profile | PS51745 | 18.943 | 220 | 302 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.7E-11 | 220 | 302 | IPR000270 | PB1 domain |
Pfam | PF00564 | 6.7E-14 | 221 | 301 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.8E-15 | 221 | 300 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MRQQSNLQNV ENNVATEPVV PSCSHRLDSF NCEGPAQVDS LLQHPTEKVV ANRRRVDLDV 60 AHDHIEIEKD MSEMMQPDYH FELPNLETDS TGNARSNDRV EHSDIAPPTN LQKIHSQKNT 120 IQRIVKDHGI TREILEQHFG MERKEAAKAL HVSISTLKRM CREYDISRWP HHKTRKQMRS 180 IQGVEPYVED QERPNLSREK GTDCLVHKRS PATGKACDSV MTVKVTYRDD IMKFELTPSS 240 TRVELQREVE KRLSISLDKF LIKYQDEDNE WITIYLDSDL RKGMNDLRLL GRTTMRLLVT 300 AKI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015167193.1 | 1e-123 | PREDICTED: protein NLP3-like | ||||
TrEMBL | A0A0V0ISB4 | 1e-114 | A0A0V0ISB4_SOLCH; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056653 | 1e-114 | (Solanum tuberosum) | ||||
STRING | PGSC0003DMT400087201 | 1e-115 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10406 | 5 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 3e-13 | NIN like protein 7 |