PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01556g10041.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41490 Da    PI: 6.2978
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01556g10041.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.5e-231053245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              r e++snrqvt++kR++gilKKA+E+SvLCd+++ +++fs+tgk
  Peinf101Scf01556g10041.1 10 RLESSSNRQVTYCKRKAGILKKANEISVLCDIDIILLMFSPTGK 53
                              679***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.039161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-27160IPR002100Transcription factor, MADS-box
CDDcd001202.57E-23257No hitNo description
SuperFamilySSF554553.92E-24289IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-191156IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRVRFNIRR LESSSNRQVT YCKRKAGILK KANEISVLCD IDIILLMFSP TGKPTLFKGE  60
RSKFDEIIAK FAQLTPQERA KRKLESLEVS LMFLARISPV SSWFLFLNPV ECNHNVLRKT  120
FKKLGHDIGV KEFLDASDPS VEELDNQVKV LRSRLTEVEK RLSWWTDPDM INKVEHLTQM  180
ECALRESLNA GHVQKLGDTT HLHLLMGREQ ERETHPLHPA NKSQHMPFPE APNSLPQGDR  240
RYSQDISIAT CSHVLDTGKE LEVDQARQAT TAILDTSVFD DLTSIASLRE QLSEQYPYNL  300
YDNPNLLEKN LDSQSEINLE GYLMDHEVQR NFDLPRSVDS INSSWDSAAG ASAFPSFDEK  360
AYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-12178177MEF2 CHIMERA
6byy_B1e-12178177MEF2 CHIMERA
6byy_C1e-12178177MEF2 CHIMERA
6byy_D1e-12178177MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233272.11e-170PREDICTED: agamous-like MADS-box protein AGL30
TrEMBLA0A3Q7FR611e-156A0A3Q7FR61_SOLLC; Uncharacterized protein
STRINGSolyc03g115910.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-62AGAMOUS-like 30