PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01533g05063.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ARF | ||||||||
Protein Properties | Length: 671aa MW: 74867.7 Da PI: 7.5444 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.3e-23 | 111 | 211 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g W +k+i+r++++r++lt+GW+ Fv++++L +gD++ Peinf101Scf01533g05063.1 111 FCKVLTASDTSTHGGFSVLRKHANEClpqldMSQQTPTQELIAKDLHGIDWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSF 195 99****************************9555556679********************************************* PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 vF ++ ++el+v+v+r Peinf101Scf01533g05063.1 196 VFLRS--GNGELRVGVRR 211 ***54..68888***998 PP | |||||||
2 | Auxin_resp | 100.3 | 2.5e-33 | 237 | 316 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+k+k+svGmRfkm+fe+e+ +err++Gt+vgv dl++ +W++S WrsLk Peinf101Scf01533g05063.1 237 ASHAVTTQTLFVVYYKPRT--SQFIIGLSKYLEAVKHKYSVGMRFKMRFEGEENPERRFTGTIVGVDDLSS-QWKDSTWRSLK 316 689***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-42 | 102 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-40 | 105 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-19 | 110 | 211 | No hit | No description |
Pfam | PF02362 | 1.2E-21 | 111 | 211 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.21 | 111 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-20 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-31 | 237 | 316 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.0E-7 | 558 | 603 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.08E-11 | 561 | 643 | No hit | No description |
PROSITE profile | PS51745 | 23.582 | 567 | 648 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.2E-5 | 613 | 654 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MANNGCYQFQ QQSNFSAEVS GKDDLYQELW KLCAGPLVDV PKEGEKVYYF PQGHMEQLEA 60 SINQELNHKI PSFNLQPKIL CRVIHIQLKQ TEPTSPDPCP PESPRPKVQS FCKVLTASDT 120 STHGGFSVLR KHANECLPQL DMSQQTPTQE LIAKDLHGID WHFKHIFRGQ PRRHLLTTGW 180 STFVSSKRLV AGDSFVFLRS GNGELRVGVR RLARQQSSMP SSVISSQSMH LGVLATASHA 240 VTTQTLFVVY YKPRTSQFII GLSKYLEAVK HKYSVGMRFK MRFEGEENPE RRFTGTIVGV 300 DDLSSQWKDS TWRSLKVQWD EPASISRPDR VSPWEIEPFV ASIPNPLVQP MTGKNKRHRP 360 YSETKISEPA SSTASAVWNP SLDSPQFNTT LERQKSDCPF SLPATQNDTS STGIKRSSSK 420 CTFTSHIEGG WRLPQLNTSS NMLVDETEDI KSASAWSGFP SVSTSQFGKG TNQPIPGLTD 480 EKKSDTNTTC RLFGIDLKST SISTTEALLP KPAKISDVAA ERAPPSTVPA GDSDQSSDLS 540 IDIKDQKQGH LQLPLKEAQS KQSFSTRSCT KVQMQGIAVG RAVDLTALKG YDELIKELEE 600 MFEIQGELHP RNKWEIVFTD DEGDMMLMGD HPWLEFCNVV RRIFICSSQD MKKLSAVNKP 660 LSCADSEVTA L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-160 | 23 | 339 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-160 | 23 | 339 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-160 | 23 | 339 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-160 | 23 | 339 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-160 | 23 | 339 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592767.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A1U7V9N8 | 0.0 | A0A1U7V9N8_NICSY; Auxin response factor | ||||
STRING | XP_009592767.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |