PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01533g04035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 25350.6 Da PI: 6.9956 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 14 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed ll ++++q+G g +W++Ia +++ gRt++++k++w+++l Peinf101Scf01533g04035.1 14 KGPWSAKEDSLLTNYINQHGEGqwrslpknagnRWSLIAGRLP-GRTDNEIKNYWNTHL 71 79*****************************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.66E-14 | 8 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-21 | 8 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.318 | 9 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 13 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 14 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.66E-12 | 16 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MGRAPCCVKE GLRKGPWSAK EDSLLTNYIN QHGEGQWRSL PKNAGNRWSL IAGRLPGRTD 60 NEIKNYWNTH LLKKLKSVGI VPKPHKIFSK KASKKGQSIQ VEKSKVYVPK PIRISCGISR 120 NNSFENVTFS TTCSSNSYEE VDVEIENNKD GIMNNENEVN FDFCDEFLME DWCHFSNKGS 180 LPMNESMVEK VYEEYLLLLS ENCYLQEDQR EHTFTGNVSE L |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792412.1 | 1e-88 | PREDICTED: transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 2e-31 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A0V0HKF8 | 2e-87 | A0A0V0HKF8_SOLCH; Putative transcription factor MYB3-like | ||||
TrEMBL | A0A1U7XK33 | 3e-87 | A0A1U7XK33_NICSY; transcription factor MYB3-like | ||||
STRING | XP_009792412.1 | 5e-88 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-33 | myb domain protein 3 |