PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01533g02041.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRF
Protein Properties Length: 437aa    MW: 48223.3 Da    PI: 6.9361
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01533g02041.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.98.4e-24142185144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e
  Peinf101Scf01533g02041.1 142 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKPVE 185
                               79***************************************987 PP
2QLQ39.12.4e-1494129237
                       QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                               +FTa+Qlq+L +Q  + Ky++a++PvPp+Ll+++++
  Peinf101Scf01533g02041.1  94 PFTASQLQELQRQTIICKYIMASMPVPPQLLLPLSN 129
                               9********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-593129IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-1194127IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.71494129IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.911142186IPR014977WRC domain
PfamPF088793.4E-19143185IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGNEEKTEHL SSFDFEKASR SDVGIDLKMK TSDKSSPPNS YPYKRTMFMP PSSQYPYFFA  60
SGKDTSTAFL GDDGGSGPIH VGARASMALS EKAPFTASQL QELQRQTIIC KYIMASMPVP  120
PQLLLPLSNR SGLDLKFSSG SDPEPWRCKR TDGKKWRCSR DVAPDQKYCE RHAHKSKPRS  180
RKPVEIHTTN NSSRHPSLVP PTTSRNHQSF QFPTVQLSAD QTRCIEWLGR GDRSGTTIPV  240
ITCNQQNLQQ LMQSSSRMGF NNDHTFQMQD ESKVYPMNFN QYISNRSNGQ TLESSLKNED  300
SSDPVIASLQ GRTTRDFIDS WSKDGLNDGL SNNGSFTSLT LSMSGWNHGL DDDNEHAQVS  360
VGTLDSERSS DEVLRSQWLN PVSWMTSTAP GGPLGEALCL GNASNLPSPH GYSNSTATSS  420
CSFNSCENGS HGLDFIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092617e-91AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence.
GenBankAP0092807e-91AP009280.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence.
GenBankHG9755207e-91HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444360.10.0PREDICTED: growth-regulating factor 8-like
TrEMBLA0A1S3XWV80.0A0A1S3XWV8_TOBAC; growth-regulating factor 8-like
STRINGXP_009784757.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.17e-38growth-regulating factor 8