PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01533g00004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 397aa    MW: 44011.6 Da    PI: 7.4934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01533g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.35.7e-3284188199
                               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                               f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v 
  Peinf101Scf01533g00004.1  84 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVS 168
                               89***************************966778999*********************************************** PP

                               EEE-.SS.SEE..EEEEE-S CS
                        B3  82 Fkld.gr.sefelvvkvfrk 99 
                               F++  g+  + +l++ ++r+
  Peinf101Scf01533g00004.1 169 FQRGvGEsAKDRLFIDWRRR 188
                               **655777888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-4375194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-3081188IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-2782171No hitNo description
PROSITE profilePS5086314.66384189IPR003340B3 DNA binding domain
PfamPF023622.1E-2984188IPR003340B3 DNA binding domain
SMARTSM010193.2E-2384189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MNSFYDQGCS HHSSSSSSSS SSSSSSQKIL VPFSYHQQQQ RSWLNSSTTN NGAEELVMMD  60
TPPSSNDLGV GPSANSMVEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSTNEKG  120
LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK GWSRFVKDKK LDAGDIVSFQ RGVGESAKDR  180
LFIDWRRRPD APTHDHHRIQ YPAAPNWNHS LFLQSYPPHT YSAYGNHVGN RPNYYHTSSN  240
YYANDSATTQ HVVNGNPYPS GSLVYLRSGA AAQAPQVVQM QRGISSGTFA EPMVFDSVPV  300
VQGKAAAKRL RLFGVNMDCP IPDSDQVCGA MLSSSRSLPT AATYSHAPQF LSSSSSTSSS  360
IPEFRTFINY HANPAAAEEE EELSDKGKAS MSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-68771891114B3 domain-containing transcription factor NGA1
5os9_B1e-68771891114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-116HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565012.11e-151PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2
SwissprotO827994e-79NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2G3DAB01e-152A0A2G3DAB0_CAPCH; B3 domain-containing protein
STRINGPGSC0003DMT4000318631e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-79B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]