PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01514g03016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 215aa MW: 23904.4 Da PI: 4.5231 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.5e-09 | 16 | 45 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+W+ eEd++l+ ++++G g+W++ ++ Peinf101Scf01514g03016.1 16 KGPWSSEEDLRLITFIQKHGHGNWRSLPKQ 45 79***********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-13 | 7 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.761 | 11 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-8 | 11 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-7 | 16 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.83E-5 | 18 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGKGRAPCCD KSKVKKGPWS SEEDLRLITF IQKHGHGNWR SLPKQAVSHT NWSQDVSTKA 60 NEVEFKDDML TEKEPKEAAK SCSPTTSYGS NLSNLSQVEI SSPKGLDMDN WILSPKVHDI 120 HDDGVIEIPS MESDIDFWDM LDILDPSPTT TTTTSNSESK QDNQPVCQGV SDSECQKWLR 180 YLENELGLSQ STGANCYDCT DAVTSQDKEA HPFTT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612238.1 | 4e-38 | PREDICTED: myb-related protein 340-like | ||||
Refseq | XP_016506175.1 | 5e-38 | PREDICTED: myb-related protein 340-like | ||||
TrEMBL | A0A1S4CYD3 | 1e-36 | A0A1S4CYD3_TOBAC; myb-related protein 340-like | ||||
STRING | XP_009612238.1 | 2e-37 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56160.1 | 5e-23 | myb domain protein 72 |