PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01503g00009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 693aa    MW: 76334.3 Da    PI: 5.8735
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01503g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.3e-24131231198
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f k+lt+sd+++ g +++p+ +ae++      + ++   +t+  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD+
  Peinf101Scf01503g00009.1 131 FTKTLTQSDANNGGGFSVPRYCAETIfprldySADP-AAQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNNKKLVAGDS 214
                               89****************************985554.4459******************************************** PP

                               EEEEE-SSSEE..EEEEE- CS
                        B3  80 vvFkldgrsefelvvkvfr 98 
                               vvF +   +++ l+v+++r
  Peinf101Scf01503g00009.1 215 VVFLR--ADNGDLCVGIRR 231
                               ****3..477888****98 PP
2Auxin_resp103.62.4e-34292374183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa+ a+++++Fev+++Prast+eF vk++ v++al+++++ GmRfkmafeteds    ++Gt+ +v+ +dp+ WpnS+Wr+L+
  Peinf101Scf01503g00009.1 292 AANLAASGQPFEVTFYPRASTPEFFVKASLVKEALQIRWCSGMRFKMAFETEDSMVSWFMGTICSVQVADPILWPNSPWRLLQ 374
                               7899****************************************************999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-37122234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-29126233IPR015300DNA-binding pseudobarrel domain
CDDcd100176.40E-22130231No hitNo description
SMARTSM010197.6E-23131233IPR003340B3 DNA binding domain
PfamPF023621.8E-22131231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521131233IPR003340B3 DNA binding domain
PfamPF065071.8E-29292374IPR010525Auxin response factor
PROSITE profilePS5174516.742602682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
NLVDFKMITF LDSMDRVKEE EDKCLDSKLW HASAGSMVQI PSVNSIVFYF PQGHAEHACG  60
SVEFRSDTRI PSYIPCRVLG IKYMADQETD EVFAKIRLTP VSGNEVEFAD DGVVGISGLD  120
RSDNPDKPAI FTKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPAAQT ILAKDVHGET  180
WKFRHIYRGT PRRHLLTTGW SSFVNNKKLV AGDSVVFLRA DNGDLCVGIR RVKRGLVGGP  240
ETSSGWNPPG ANFVVPYGGF SAFLRDDENK LMNSSGRLMN RGKVKAESVI EAANLAASGQ  300
PFEVTFYPRA STPEFFVKAS LVKEALQIRW CSGMRFKMAF ETEDSMVSWF MGTICSVQVA  360
DPILWPNSPW RLLQVTWDEP DLLQNVKCVS PWLVELVSNM SNVHLSPFSP PSKKLRLPQH  420
SDFPLDGHLP MLGFPRNHLL RPSGPFGCLP NDTPAGMQGA RHSQYGFSLA DFHLNKLQSS  480
LFPVGFPLLD QAAAPPAPSN STMIPNPSSS NDMSCLLTIG SSTQTVKKSE CKKAPQLVLF  540
GQPILTEQQL SLSSSGDTVS PVRAGNSSSD GNADKVGNSS DESGSAFDHH GLPFHSEQRV  600
EIGHCKVFIE SEDVGRTLDL SVLGSYDELY RKLADMFGIE ISEVLNRVLY RDISDVEKQL  660
GDEPFSDFMK TARRLTILTD ASSDNVGSKD YRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-78939532388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542732.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2VZR80.0A0A2G2VZR8_CAPBA; Auxin response factor
TrEMBLA0A2G3BJ950.0A0A2G3BJ95_CAPCH; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]