PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01482g15029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 27107.5 Da PI: 4.7892 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1.1e-17 | 30 | 80 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le +F+++ ++ +++ +LA+ +gL+ rqV +WFqN+Ra++k Peinf101Scf01482g15029.1 30 RFTDEQVKLLEFMFNQETKLEPRKKLQLARDIGLQPRQVAIWFQNKRARWK 80 8*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.26E-17 | 20 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.487 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-14 | 25 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.25E-13 | 29 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-19 | 29 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.8E-15 | 29 | 80 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.1E-5 | 53 | 62 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.1E-5 | 62 | 78 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.0E-15 | 82 | 122 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEPEECPALE KCETPKSKKA LKKKSENVRR FTDEQVKLLE FMFNQETKLE PRKKLQLARD 60 IGLQPRQVAI WFQNKRARWK SKQLEHDYTI LKANFDKLNM QFQTLKTEKE RLLIQVETLN 120 DQIENKLVRG SRSQESKDNE LYTSSENGGT DLELKDSPGC SNARIDYMMV KEEDDDTVEE 180 TNKYLKPKEE AEFWNLEELE DNSLESPEHW SVGLGSFFSQ PCDNSKLWDF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611805.1 | 1e-120 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
Refseq | XP_016442723.1 | 1e-120 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | A0A1S3XRZ9 | 1e-119 | A0A1S3XRZ9_TOBAC; homeobox-leucine zipper protein ATHB-7-like | ||||
STRING | XP_009611805.1 | 1e-119 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 8e-40 | homeobox 7 |