PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01479g00002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C3H

Protein Properties

Length: 1358aa MW: 145396 Da PI: 4.3247

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01479g00002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	1334	1357	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 y+ ++C+ ++r+G Ck Gd+C+F+H Peinf101Scf01479g00002.1 1334 YGNRPCP-YYRSGRCKKGDSCNFIH 1357 7889*.9999*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.31E-8	491	554	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.8E-9	498	554	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd15568	1.35E-17	511	553	No hit	No description
SMART	SM00249	1.5E-5	511	557	IPR001965	Zinc finger, PHD-type
SuperFamily	SSF55277	1.7E-19	818	877	IPR003169	GYF domain
CDD	cd00072	1.05E-19	824	881	No hit	No description
PROSITE profile	PS50829	17.028	824	878	IPR003169	GYF domain
SMART	SM00444	3.7E-21	825	880	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	1.0E-19	825	878	IPR003169	GYF domain
Pfam	PF02213	3.4E-16	826	870	IPR003169	GYF domain
PROSITE profile	PS50103	15.122	1333	1358	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.5E-5	1335	1357	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-5	1336	1358	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.9E-5	1337	1358	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1358 aa Download sequence Send to blast
MAEDEEAIPN VNNNTLMAHD PKPEFAATSP VPVVVKDTVL PVGESEVTGE TCQNTGGADV 60 AVAEGEKVHD VGESAIGLSC SNDGEVTETV KMENEAVAEE ENVTVLEKDE TIEEAVDAMK 120 EEEIKCDDEK VVVASSNEQK DEMMEEALNA TKEEEVKSDD DKVVVMSRNE SESNVIIMAE 180 ANAVSSDVLI GANDGIDIVS KNDSVEGGEN GEQVLEANTS IVEACIGLGK DETMGAEKVV 240 GTKNEDDDGK VVMTRNENDE TMAEAKEGDM SSDMLIGANN EATKDEEVEI SKMKHEDEAV 300 ENVTDNAEKV VVTRKEEGDE MVSRDDSSAV EARMELEKDG EMEAIKHEEL EIPPRKEEDV 360 EMVSQVDSSA VEARLESEKD GEMEGTKHEE EEIPPRVFDD AGGGGVTLEK EDEATGAENE 420 TDKAEKVVVT QNEIDDEMDT MKQDEVEPVP PDEDEGTGAE DEAANATTEE TETDVPESGK 480 GSGGKRKRKN TKVTVKSKSA GRARKTIGED VCFICFDGGD LVLCDRRGCT KAYHPSCVDR 540 DEDFFRAKGR WNCEGEGMGY SATKKLASTL VFGLLLSMNF KEECKRLRQS IKCGLINRLT 600 VGDILDKAME IQTARVNDWL ESEILRLSHL RDRASEKGRK KEYPLECVEK LQLLKTPDER 660 HRRLEEVPEI HADPKMDPSY ESEDEDSENV HMRSRDSSFS RRGRGPVSSG TNFSPKDSWG 720 PAGKVSSKNW ELNRSSGQNV LSRSEDGAHS GGGLNEDIWS EGRERETESK NLEKPTPAAN 780 TDPIGPNSQF LSRTESFSGA SSVCSPVTPQ SKVAETSIKI NEAEKMWHYK DPSGKIQGPF 840 SMVQLRKWSN TGYFPADLRI WKTTDKQEES TLLTDALAGR FEKVPSAVDN ILPTAVLQNR 900 GSERPQVDQN VGSQNSPRRL VSSGGGMTSS VDVSALPTER WSNNDSMNLP SPTPKQDTAS 960 WVGGDGPSVT VANLYPSGNS VHQSPPAPPD GGVRTSASIH NSGGVSVRGS ENNYVNSGGD 1020 YGPVPTSEQV AAAQSGYSLQ NAQSFAGSEQ HIGLTNSQPG AQDAALQSES LNMQNPNVSV 1080 LVPGQPQGYG NWGAASSSVQ NLAGNFSNAG ASALPQPDYW RAPAQGSQQN IQPTTVPTVP 1140 WGAGLQENVS SSTGWGMMPG NPNLGWNGAS PAIMNVNWGA TVQAMPPGNA NSGWVPTGPL 1200 PGSSNSGWVA QSGNPSVQGL APGNANPGWV APAVGAGSTI QGAPSGNGWA MGAANPGALT 1260 QGPPQGDSNQ GRGAPTGNQG TRNNDHHQDR RFSGQMDKGG SRGSNSGYNN SRNWDRQSSF 1320 GSRGSGGSSR GGGYGNRPCP YYRSGRCKKG DSCNFIHN

Sequence ? help Back to Top

Protein Sequence Length: 1358 aa Download sequence Send to blast

MAEDEEAIPN VNNNTLMAHD PKPEFAATSP VPVVVKDTVL PVGESEVTGE TCQNTGGADV  60
AVAEGEKVHD VGESAIGLSC SNDGEVTETV KMENEAVAEE ENVTVLEKDE TIEEAVDAMK  120
EEEIKCDDEK VVVASSNEQK DEMMEEALNA TKEEEVKSDD DKVVVMSRNE SESNVIIMAE  180
ANAVSSDVLI GANDGIDIVS KNDSVEGGEN GEQVLEANTS IVEACIGLGK DETMGAEKVV  240
GTKNEDDDGK VVMTRNENDE TMAEAKEGDM SSDMLIGANN EATKDEEVEI SKMKHEDEAV  300
ENVTDNAEKV VVTRKEEGDE MVSRDDSSAV EARMELEKDG EMEAIKHEEL EIPPRKEEDV  360
EMVSQVDSSA VEARLESEKD GEMEGTKHEE EEIPPRVFDD AGGGGVTLEK EDEATGAENE  420
TDKAEKVVVT QNEIDDEMDT MKQDEVEPVP PDEDEGTGAE DEAANATTEE TETDVPESGK  480
GSGGKRKRKN TKVTVKSKSA GRARKTIGED VCFICFDGGD LVLCDRRGCT KAYHPSCVDR  540
DEDFFRAKGR WNCEGEGMGY SATKKLASTL VFGLLLSMNF KEECKRLRQS IKCGLINRLT  600
VGDILDKAME IQTARVNDWL ESEILRLSHL RDRASEKGRK KEYPLECVEK LQLLKTPDER  660
HRRLEEVPEI HADPKMDPSY ESEDEDSENV HMRSRDSSFS RRGRGPVSSG TNFSPKDSWG  720
PAGKVSSKNW ELNRSSGQNV LSRSEDGAHS GGGLNEDIWS EGRERETESK NLEKPTPAAN  780
TDPIGPNSQF LSRTESFSGA SSVCSPVTPQ SKVAETSIKI NEAEKMWHYK DPSGKIQGPF  840
SMVQLRKWSN TGYFPADLRI WKTTDKQEES TLLTDALAGR FEKVPSAVDN ILPTAVLQNR  900
GSERPQVDQN VGSQNSPRRL VSSGGGMTSS VDVSALPTER WSNNDSMNLP SPTPKQDTAS  960
WVGGDGPSVT VANLYPSGNS VHQSPPAPPD GGVRTSASIH NSGGVSVRGS ENNYVNSGGD  1020
YGPVPTSEQV AAAQSGYSLQ NAQSFAGSEQ HIGLTNSQPG AQDAALQSES LNMQNPNVSV  1080
LVPGQPQGYG NWGAASSSVQ NLAGNFSNAG ASALPQPDYW RAPAQGSQQN IQPTTVPTVP  1140
WGAGLQENVS SSTGWGMMPG NPNLGWNGAS PAIMNVNWGA TVQAMPPGNA NSGWVPTGPL  1200
PGSSNSGWVA QSGNPSVQGL APGNANPGWV APAVGAGSTI QGAPSGNGWA MGAANPGALT  1260
QGPPQGDSNQ GRGAPTGNQG TRNNDHHQDR RFSGQMDKGG SRGSNSGYNN SRNWDRQSSF  1320
GSRGSGGSSR GGGYGNRPCP YYRSGRCKKG DSCNFIHN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233352.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2
TrEMBL	A0A1U7W446	0.0	A0A1U7W446_NICSY; zinc finger CCCH domain-containing protein 19-like isoform X2
STRING	XP_009769403.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3236	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	2e-93	nucleic acid binding;zinc ion binding;DNA binding