PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01468g08062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | Nin-like | ||||||||
Protein Properties | Length: 938aa MW: 104334 Da PI: 6.8411 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.6 | 6.1e-29 | 618 | 668 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Peinf101Scf01468g08062.1 618 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 668 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.450.40 | 5.2E-4 | 213 | 299 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.359 | 607 | 688 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-24 | 621 | 668 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 8.41E-21 | 832 | 926 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.7E-20 | 838 | 921 | No hit | No description |
PROSITE profile | PS51745 | 20.935 | 840 | 923 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.2E-15 | 840 | 922 | IPR000270 | PB1 domain |
SMART | SM00666 | 8.2E-23 | 840 | 923 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.07E-38 | 841 | 922 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 938 aa Download sequence Send to blast |
MEDGAFTLND MFARLSDNTT TDFGLMGEFF YDGFRLETTE RSNFCQPLPF TAASLASQPF 60 LFSTLDTTLG HPLPTTDQVT LQEDTEIDKV VDNLFAQMDE FSATRREASP PPDSSGQPSS 120 FQVEGTQMNK RLWIGPNRNP SPTLSVKKRL VQAIEYLKDS TRNKDVLIQI WVPVKRGGKH 180 VLITNNQPYS LNPNSRSLVE YRYVSQNYQF AAEKDSKELV GLPGRVFLKK LPEWTPDVRY 240 FKREEYPRVN HAHQHNVRGS IAVPVFESGS GTCLGVVEIV TTTQKTHYHP ELEDVCRALE 300 DYNESYLAAL AEILYILTCV CDTHKLPLAQ TWAPCIQQGK GGCLHSDENV ASCVSTVDSA 360 CYVRDPQVLP FHFACSEQHL LKGEGVAGGA FNTNQPCFAT DVTAFSKTEY PLSHHARMFG 420 LCSAVAIRLR SIYTGLADFV LEFFLPLDCK NTEDQKRMLS SLSSVIQQNC QSLRVVTDQE 480 LQVEKELLPR EKVSLPVGGS HEEESRKPIS PPYRDPSDQD ASSWITQMMD AQRKGKEPAV 540 SLENHKDEQE ENFKVTATHW DYTQRESVHA STFSEPNQMQ ENFGPEGGSG GSLDFSSVSG 600 SHSSGAKRAG ERRRSKTEKS ISLQVLRQYF AGSLKDAAKS IGVCPTTLKR ICRQHGITRW 660 PSRKIKKVGH SLQKLQLVID SVHGAEGSIK LSSFYSNFPE LSSPNKPGTS NISASKNHDH 720 LHQVNTQPDG SIISPGTTTS KSTSSSGSHN SSSSLFGSTG SKHLFPLGNV FTTGNALAEE 780 HPGGMLKRAR TDAELHDMGQ EETKLMVRSQ SQKIQKDHFS LEPLHPLATS SNQILRDSAT 840 FKVKAIFGKE KVRFSLQSHW GFGDVQHEVL RRFNVEDVGK IDLKYLDDDD EWVLLTCDAD 900 LEECIDIHRL AKRRTIKVSL HHACHPNLGS SFGSSGPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 908 | 917 | RLAKRRTIKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009623517.1 | 0.0 | PREDICTED: protein NLP2-like | ||||
Refseq | XP_016493353.1 | 0.0 | PREDICTED: protein NLP2-like | ||||
Refseq | XP_018632685.1 | 0.0 | PREDICTED: protein NLP2-like | ||||
TrEMBL | A0A1S4BWX7 | 0.0 | A0A1S4BWX7_TOBAC; protein NLP2-like | ||||
STRING | XP_009623517.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |