PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01463g01004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 194aa MW: 22885.7 Da PI: 8.1988 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.2e-12 | 34 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ +v ++G ++W+ a+ g Rt++ +k++w++++ Peinf101Scf01463g01004.1 34 KGPWTEQEDLQLAFYVDLFGDRRWDFLAKVSG--RTDNKIKNYWRTHM 79 79************************999997..***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-16 | 27 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.561 | 29 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-12 | 30 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-10 | 33 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-11 | 34 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.26E-7 | 36 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
VTQKKTSYLR SGQLKRGKEQ AEKRAKMVQQ EMRKGPWTEQ EDLQLAFYVD LFGDRRWDFL 60 AKVSGRTDNK IKNYWRTHMR KKAQEERKNR ASIMSPSSSF SNSSSFFSNS PDVDFMPITE 120 NNERNFYDTV GDQEKGNSAK VFSMDEIWKD IELSECKQIT PSPIWDYCPD SLWITDEEEN 180 KMFPLISKHN HLSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770621.1 | 1e-63 | PREDICTED: transcription factor MYB48-like | ||||
Refseq | XP_016514046.1 | 1e-63 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q53NK6 | 2e-26 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A1S4DKY0 | 3e-62 | A0A1S4DKY0_TOBAC; transcription factor MYB48-like | ||||
TrEMBL | A0A1U7W092 | 3e-62 | A0A1U7W092_NICSY; transcription factor MYB48-like | ||||
STRING | XP_009770621.1 | 4e-63 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 6e-26 | myb domain protein 59 |
Publications ? help Back to Top | |||
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