PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01456g01001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 294aa MW: 32779.9 Da PI: 7.1116

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01456g01001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Peinf101Scf01456g01001.1 100 FSCSFCKREFSTSQALGGHQNAH 122 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.0E-5	91	126	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.23E-6	96	127	No hit	No description
PROSITE profile	PS50157	11.552	100	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MYVVKPCSSE ASSISATSED YEPTTKKMKQ KVSEGSHELK PQELSSACVL LDLKVHNNGY 60 NKNNSSDLEL NLFNPTSTPA SESSNEATPK KRRSTESRVF SCSFCKREFS TSQALGGHQN 120 AHKQERALSK RGNGMVDVVS PFGPPNYYPY YNPYSSFNSY MPYNTSFTSR SSSLGVHEAA 180 GSSAIRKTSS YQPWSSFFSG SNYRFSPEKL SSFFRVENLP GYNMDDKING IGAASIENSL 240 KFDNKSSAKA FSLRDSPVND DYDHDGNNYR KMGFGEEDAQ RNQEESELDL NLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600727.2	1e-108	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S3X541	1e-105	A0A1S3X541_TOBAC; zinc finger protein 4-like
TrEMBL	A0A1U7XKL7	1e-105	A0A1U7XKL7_NICSY; zinc finger protein 4
STRING	XP_009600727.1	1e-107	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	1e-16	C2H2 family protein