PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01452g13036.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 827aa MW: 89629.8 Da PI: 6.2769

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01452g13036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4e-20	130	185	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F++n++p++++r eL k+l L+ rqVk+WFqNrR+++k Peinf101Scf01452g13036.1 130 KKKYHRHTPYQIQELESAFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 185 79999************************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-21	106	189	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-20	116	187	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.767	127	187	IPR001356	Homeobox domain
SMART	SM00389	5.5E-16	129	191	IPR001356	Homeobox domain
CDD	cd00086	2.13E-17	130	187	No hit	No description
Pfam	PF00046	9.4E-18	130	185	IPR001356	Homeobox domain
PROSITE profile	PS50848	38.423	329	565	IPR002913	START domain
SuperFamily	SSF55961	2.33E-27	330	562	No hit	No description
CDD	cd08875	1.17E-110	333	561	No hit	No description
SMART	SM00234	7.3E-41	338	562	IPR002913	START domain
Pfam	PF01852	9.3E-45	339	562	IPR002913	START domain
SuperFamily	SSF55961	1.65E-13	593	820	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MSFGGFIGSS TSGGNGGGDG GGSGVSRVVA DSCSYETMPT VVTIAHPQQL VTSPLNTQPM 60 FNSSPLSLAL KPKMEGVGDM GMIGENFDVI GMGRSSREDE YESRSGSDNL DGGGASGDDM 120 ETPLGKSSRK KKYHRHTPYQ IQELESAFKE NPHPDEKARL ELGKRLTLES RQVKFWFQNR 180 RTQMKTQLER HENAILKQEN DKLRIENIAM KEAMRSPICS HCGGQAILGE IHIEEHHLRI 240 ENARLRDELN RICVLANKFL GRPLASFPGS MSPAMVNSGL ELAVGRNGFG SMNSCDTALP 300 MGLDFGSGLS SALPMMSPRP TSSTTSTDVS FDKSMLMELA FASMNELLKL AEIGDPLWFR 360 NLDGSGETLN LEEYARSFPP CIGMKPANFT TEATKATGTV MMNSLALVEI LMDTSQWVDM 420 FSCIVGRTSQ INVISSNTSG SRNGTLQLIQ AEFHVLSALV PARQVKFLRF CKQHAEGVWG 480 VVDVSIDAIQ EGSQPREAGS CRRLPSGCIL QDLPNGYSKV IWIEHMEYDE STVHNFYRPF 540 IRSGLGFGSQ RWIATLQRQC ECLAVISSAV PSGDNTVVSP SGRRSVAMLA RRMTRNFCGV 600 VCSTFYKWET IQAGTAEDTK LMIRKSIGDP GEPPGVVLSA TRTIWLPVTH QRLFDFLRDE 660 QTRSQWDVLS HGGPMHQIVH IAKGQDLGNN ISLFRANAAA SDASQNSMLI LQDSCTDVSG 720 SIVAYAAVDT AEMNVVMSGG DSSCVAILPS GFAIVPDCLQ NSGGITNNGM LEKEGNGGSN 780 DGSLLTLGLQ ILVNSLPAAK LTMESVNTVN ALISRTLQGI KAAFQCN

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MSFGGFIGSS TSGGNGGGDG GGSGVSRVVA DSCSYETMPT VVTIAHPQQL VTSPLNTQPM  60
FNSSPLSLAL KPKMEGVGDM GMIGENFDVI GMGRSSREDE YESRSGSDNL DGGGASGDDM  120
ETPLGKSSRK KKYHRHTPYQ IQELESAFKE NPHPDEKARL ELGKRLTLES RQVKFWFQNR  180
RTQMKTQLER HENAILKQEN DKLRIENIAM KEAMRSPICS HCGGQAILGE IHIEEHHLRI  240
ENARLRDELN RICVLANKFL GRPLASFPGS MSPAMVNSGL ELAVGRNGFG SMNSCDTALP  300
MGLDFGSGLS SALPMMSPRP TSSTTSTDVS FDKSMLMELA FASMNELLKL AEIGDPLWFR  360
NLDGSGETLN LEEYARSFPP CIGMKPANFT TEATKATGTV MMNSLALVEI LMDTSQWVDM  420
FSCIVGRTSQ INVISSNTSG SRNGTLQLIQ AEFHVLSALV PARQVKFLRF CKQHAEGVWG  480
VVDVSIDAIQ EGSQPREAGS CRRLPSGCIL QDLPNGYSKV IWIEHMEYDE STVHNFYRPF  540
IRSGLGFGSQ RWIATLQRQC ECLAVISSAV PSGDNTVVSP SGRRSVAMLA RRMTRNFCGV  600
VCSTFYKWET IQAGTAEDTK LMIRKSIGDP GEPPGVVLSA TRTIWLPVTH QRLFDFLRDE  660
QTRSQWDVLS HGGPMHQIVH IAKGQDLGNN ISLFRANAAA SDASQNSMLI LQDSCTDVSG  720
SIVAYAAVDT AEMNVVMSGG DSSCVAILPS GFAIVPDCLQ NSGGITNNGM LEKEGNGGSN  780
DGSLLTLGLQ ILVNSLPAAK LTMESVNTVN ALISRTLQGI KAAFQCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	22	SGGNGGGDGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019251816.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1J6I250	0.0	A0A1J6I250_NICAT; Homeobox-leucine zipper protein roc5
STRING	XP_009606532.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]