PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01452g09003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24244.2 Da PI: 6.2893 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.6e-17 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + + +Wv+e+r+p +k+ r++lg++ tae+Aa+a++ a+ +l+g Peinf101Scf01452g09003.1 55 PVYRGVRKRN-SDKWVCEVREP---NKKSRIWLGTYPTAEMAARAHDVAAIALRG 105 68*****888.7******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-13 | 55 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 56 | 115 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.852 | 56 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-28 | 56 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 56 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-8 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.04E-31 | 57 | 115 | No hit | No description |
PRINTS | PR00367 | 7.2E-8 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDIFQSNSSD RLLDSSSHSD NSSCINNISD EEVILASNNP KKRAGRKKFT ETRHPVYRGV 60 RKRNSDKWVC EVREPNKKSR IWLGTYPTAE MAARAHDVAA IALRGRSACL NFADSAWKLP 120 VPASSDPKDI QKAAAEAAEA FRPLESAGEE SKEESTTPET PSKSKFFMDE EALFDMPGLL 180 ASMAEGLMLP PPQCSEGVGE SRTKESRIFS SCNLNVTFPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-14 | 54 | 112 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ786398 | 1e-100 | AJ786398.1 Schedonorus arundinaceus mRNA for avirulence-like protein 1 (avrl gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784267.1 | 2e-97 | PREDICTED: dehydration-responsive element-binding protein 1D-like | ||||
Swissprot | Q9FJ93 | 4e-73 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A1U7WWH2 | 5e-96 | A0A1U7WWH2_NICSY; dehydration-responsive element-binding protein 1D-like | ||||
TrEMBL | B3TPN5 | 3e-96 | B3TPN5_SOLHA; CRT binding factor 3 | ||||
TrEMBL | B3TPP3 | 4e-96 | B3TPP3_SOLHA; CRT binding factor 3 | ||||
STRING | XP_009784267.1 | 8e-97 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 4e-65 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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